Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22337 | 5' | -55.9 | NC_005045.1 | + | 38893 | 0.66 | 0.618616 |
Target: 5'- gGGGCGCAGGUacgccaGCAGGuCCCa- -3' miRNA: 3'- gCCCGUGUCCGcauag-CGUUU-GGGag -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 41599 | 0.66 | 0.618616 |
Target: 5'- gCGGGUccGguGGgGUAgCGCc-GCCCUCg -3' miRNA: 3'- -GCCCG--UguCCgCAUaGCGuuUGGGAG- -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 33376 | 0.66 | 0.589527 |
Target: 5'- aGGGCGCAcGGCGccuccugggccgucuUAUCGacGACCCa- -3' miRNA: 3'- gCCCGUGU-CCGC---------------AUAGCguUUGGGag -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 32354 | 0.67 | 0.55189 |
Target: 5'- uCGGGCACAuGCG-GUUGCGuugGGgCCUCu -3' miRNA: 3'- -GCCCGUGUcCGCaUAGCGU---UUgGGAG- -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 14110 | 0.67 | 0.55189 |
Target: 5'- aGGGCGaGGGCGgcUUGCAGAgCgUUg -3' miRNA: 3'- gCCCGUgUCCGCauAGCGUUUgGgAG- -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 27751 | 0.67 | 0.519302 |
Target: 5'- --cGUAUuuAGG-GUAUUGCAGACCCUCa -3' miRNA: 3'- gccCGUG--UCCgCAUAGCGUUUGGGAG- -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 13606 | 0.67 | 0.519302 |
Target: 5'- gCGGGCAgCGucGGCcaugaUGUCGCGcAGCCCUUg -3' miRNA: 3'- -GCCCGU-GU--CCGc----AUAGCGU-UUGGGAG- -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 14120 | 0.67 | 0.508605 |
Target: 5'- -cGGCGguGGCGgcgGUCGCAucuuCCCg- -3' miRNA: 3'- gcCCGUguCCGCa--UAGCGUuu--GGGag -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 9868 | 0.67 | 0.498002 |
Target: 5'- uCGGGguCGGGCcaguuGUA-CGCAAugCCUa -3' miRNA: 3'- -GCCCguGUCCG-----CAUaGCGUUugGGAg -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 5662 | 0.68 | 0.456646 |
Target: 5'- uGGGCguAUAGGCGUGg-GCGAauGCCCg- -3' miRNA: 3'- gCCCG--UGUCCGCAUagCGUU--UGGGag -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 11293 | 0.69 | 0.426873 |
Target: 5'- gGGGCGCaAGGCG--UCGCccuuuGACCCcCg -3' miRNA: 3'- gCCCGUG-UCCGCauAGCGu----UUGGGaG- -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 41288 | 0.69 | 0.398281 |
Target: 5'- gCGGGCGCcgGGGCG-GUUGCAcaGGCUgUCa -3' miRNA: 3'- -GCCCGUG--UCCGCaUAGCGU--UUGGgAG- -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 2951 | 0.7 | 0.35345 |
Target: 5'- uGGGCGCcGGCGUGacCGUGAACCgCUa -3' miRNA: 3'- gCCCGUGuCCGCAUa-GCGUUUGG-GAg -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 245 | 0.71 | 0.304526 |
Target: 5'- uGGGUACGGGCuGUGcUGCucAUCCUCu -3' miRNA: 3'- gCCCGUGUCCG-CAUaGCGuuUGGGAG- -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 42308 | 0.71 | 0.304526 |
Target: 5'- uGGGUACGGGCuGUGcUGCucAUCCUCu -3' miRNA: 3'- gCCCGUGUCCG-CAUaGCGuuUGGGAG- -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 34822 | 0.72 | 0.289415 |
Target: 5'- gGuGGCGCGGGCGg--CGCAGggggaugaagcgGCCCUUc -3' miRNA: 3'- gC-CCGUGUCCGCauaGCGUU------------UGGGAG- -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 35812 | 0.77 | 0.124279 |
Target: 5'- cCGGGaccuggGCAGGCGUGUCGCGGAagaugcggaCCUCu -3' miRNA: 3'- -GCCCg-----UGUCCGCAUAGCGUUUg--------GGAG- -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 29674 | 0.78 | 0.107684 |
Target: 5'- aGGaaGCcGGCGUcgCGCAGACCCUCa -3' miRNA: 3'- gCCcgUGuCCGCAuaGCGUUUGGGAG- -5' |
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22337 | 5' | -55.9 | NC_005045.1 | + | 21549 | 1.1 | 0.00047 |
Target: 5'- gCGGGCACAGGCGUAUCGCAAACCCUCg -3' miRNA: 3'- -GCCCGUGUCCGCAUAGCGUUUGGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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