miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22337 5' -55.9 NC_005045.1 + 38893 0.66 0.618616
Target:  5'- gGGGCGCAGGUacgccaGCAGGuCCCa- -3'
miRNA:   3'- gCCCGUGUCCGcauag-CGUUU-GGGag -5'
22337 5' -55.9 NC_005045.1 + 41599 0.66 0.618616
Target:  5'- gCGGGUccGguGGgGUAgCGCc-GCCCUCg -3'
miRNA:   3'- -GCCCG--UguCCgCAUaGCGuuUGGGAG- -5'
22337 5' -55.9 NC_005045.1 + 33376 0.66 0.589527
Target:  5'- aGGGCGCAcGGCGccuccugggccgucuUAUCGacGACCCa- -3'
miRNA:   3'- gCCCGUGU-CCGC---------------AUAGCguUUGGGag -5'
22337 5' -55.9 NC_005045.1 + 14110 0.67 0.55189
Target:  5'- aGGGCGaGGGCGgcUUGCAGAgCgUUg -3'
miRNA:   3'- gCCCGUgUCCGCauAGCGUUUgGgAG- -5'
22337 5' -55.9 NC_005045.1 + 32354 0.67 0.55189
Target:  5'- uCGGGCACAuGCG-GUUGCGuugGGgCCUCu -3'
miRNA:   3'- -GCCCGUGUcCGCaUAGCGU---UUgGGAG- -5'
22337 5' -55.9 NC_005045.1 + 13606 0.67 0.519302
Target:  5'- gCGGGCAgCGucGGCcaugaUGUCGCGcAGCCCUUg -3'
miRNA:   3'- -GCCCGU-GU--CCGc----AUAGCGU-UUGGGAG- -5'
22337 5' -55.9 NC_005045.1 + 27751 0.67 0.519302
Target:  5'- --cGUAUuuAGG-GUAUUGCAGACCCUCa -3'
miRNA:   3'- gccCGUG--UCCgCAUAGCGUUUGGGAG- -5'
22337 5' -55.9 NC_005045.1 + 14120 0.67 0.508605
Target:  5'- -cGGCGguGGCGgcgGUCGCAucuuCCCg- -3'
miRNA:   3'- gcCCGUguCCGCa--UAGCGUuu--GGGag -5'
22337 5' -55.9 NC_005045.1 + 9868 0.67 0.498002
Target:  5'- uCGGGguCGGGCcaguuGUA-CGCAAugCCUa -3'
miRNA:   3'- -GCCCguGUCCG-----CAUaGCGUUugGGAg -5'
22337 5' -55.9 NC_005045.1 + 5662 0.68 0.456646
Target:  5'- uGGGCguAUAGGCGUGg-GCGAauGCCCg- -3'
miRNA:   3'- gCCCG--UGUCCGCAUagCGUU--UGGGag -5'
22337 5' -55.9 NC_005045.1 + 11293 0.69 0.426873
Target:  5'- gGGGCGCaAGGCG--UCGCccuuuGACCCcCg -3'
miRNA:   3'- gCCCGUG-UCCGCauAGCGu----UUGGGaG- -5'
22337 5' -55.9 NC_005045.1 + 41288 0.69 0.398281
Target:  5'- gCGGGCGCcgGGGCG-GUUGCAcaGGCUgUCa -3'
miRNA:   3'- -GCCCGUG--UCCGCaUAGCGU--UUGGgAG- -5'
22337 5' -55.9 NC_005045.1 + 2951 0.7 0.35345
Target:  5'- uGGGCGCcGGCGUGacCGUGAACCgCUa -3'
miRNA:   3'- gCCCGUGuCCGCAUa-GCGUUUGG-GAg -5'
22337 5' -55.9 NC_005045.1 + 42308 0.71 0.304526
Target:  5'- uGGGUACGGGCuGUGcUGCucAUCCUCu -3'
miRNA:   3'- gCCCGUGUCCG-CAUaGCGuuUGGGAG- -5'
22337 5' -55.9 NC_005045.1 + 245 0.71 0.304526
Target:  5'- uGGGUACGGGCuGUGcUGCucAUCCUCu -3'
miRNA:   3'- gCCCGUGUCCG-CAUaGCGuuUGGGAG- -5'
22337 5' -55.9 NC_005045.1 + 34822 0.72 0.289415
Target:  5'- gGuGGCGCGGGCGg--CGCAGggggaugaagcgGCCCUUc -3'
miRNA:   3'- gC-CCGUGUCCGCauaGCGUU------------UGGGAG- -5'
22337 5' -55.9 NC_005045.1 + 35812 0.77 0.124279
Target:  5'- cCGGGaccuggGCAGGCGUGUCGCGGAagaugcggaCCUCu -3'
miRNA:   3'- -GCCCg-----UGUCCGCAUAGCGUUUg--------GGAG- -5'
22337 5' -55.9 NC_005045.1 + 29674 0.78 0.107684
Target:  5'- aGGaaGCcGGCGUcgCGCAGACCCUCa -3'
miRNA:   3'- gCCcgUGuCCGCAuaGCGUUUGGGAG- -5'
22337 5' -55.9 NC_005045.1 + 21549 1.1 0.00047
Target:  5'- gCGGGCACAGGCGUAUCGCAAACCCUCg -3'
miRNA:   3'- -GCCCGUGUCCGCAUAGCGUUUGGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.