Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 22817 | 1.14 | 0.000469 |
Target: 5'- aGCAGCACAAGCCGGCUAUCGAGACGGg -3' miRNA: 3'- -CGUCGUGUUCGGCCGAUAGCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 30775 | 0.75 | 0.263715 |
Target: 5'- aGCAGCACAAGCCGcaUGUCGAagGACu- -3' miRNA: 3'- -CGUCGUGUUCGGCcgAUAGCU--CUGcc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 41296 | 0.74 | 0.285051 |
Target: 5'- aCAGCAC-AGCgGGCgc-CGGGGCGGu -3' miRNA: 3'- cGUCGUGuUCGgCCGauaGCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 40454 | 0.74 | 0.285051 |
Target: 5'- cGCAGCACAgaGGCUGGCgaucUCGuaGGGCGa -3' miRNA: 3'- -CGUCGUGU--UCGGCCGau--AGC--UCUGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 1047 | 0.74 | 0.285051 |
Target: 5'- cGCGGCACAAGCCauaGGCgcaaGGGACa- -3' miRNA: 3'- -CGUCGUGUUCGG---CCGauagCUCUGcc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 20096 | 0.74 | 0.292459 |
Target: 5'- cCGGCuGCGGGCCgaGGCUGUCGAGuACGu -3' miRNA: 3'- cGUCG-UGUUCGG--CCGAUAGCUC-UGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 41249 | 0.72 | 0.374793 |
Target: 5'- aGCAgGCACAGGCCGGUcagcccaCG-GGCGGu -3' miRNA: 3'- -CGU-CGUGUUCGGCCGaua----GCuCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 6045 | 0.72 | 0.374793 |
Target: 5'- gGUAGgucaACGGGCCGGCcugUAUUGGGACGa -3' miRNA: 3'- -CGUCg---UGUUCGGCCG---AUAGCUCUGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 10598 | 0.71 | 0.411845 |
Target: 5'- -aAGCGCAAGCCGGagAUCaccguuGACGGg -3' miRNA: 3'- cgUCGUGUUCGGCCgaUAGcu----CUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 26531 | 0.71 | 0.431202 |
Target: 5'- cGCGGCAaccauAGCCGGCUAccucaaccaaCGGGGCGu -3' miRNA: 3'- -CGUCGUgu---UCGGCCGAUa---------GCUCUGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 30097 | 0.71 | 0.431202 |
Target: 5'- -aGGCGCAGGCCGaGCUGcguacccugcaCGAGGCGa -3' miRNA: 3'- cgUCGUGUUCGGC-CGAUa----------GCUCUGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 37746 | 0.7 | 0.461208 |
Target: 5'- aGUGGCAC--GCCGaGCUAcUCGaAGACGGc -3' miRNA: 3'- -CGUCGUGuuCGGC-CGAU-AGC-UCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 20796 | 0.7 | 0.471453 |
Target: 5'- cCAGUucCAGGCCGGUcggCGAGACGu -3' miRNA: 3'- cGUCGu-GUUCGGCCGauaGCUCUGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 23486 | 0.7 | 0.49228 |
Target: 5'- cGCAGCcgGCGgagcuaccggGGCCGGCUGagCGGGugcuuGCGGa -3' miRNA: 3'- -CGUCG--UGU----------UCGGCCGAUa-GCUC-----UGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 18030 | 0.7 | 0.49228 |
Target: 5'- aGCAGCAgAucGCCcacgaagaGGCccuUGUCGGGGCGGc -3' miRNA: 3'- -CGUCGUgUu-CGG--------CCG---AUAGCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 6182 | 0.7 | 0.49228 |
Target: 5'- -aGGCugAGGCCgaGGCUcgUGAG-CGGg -3' miRNA: 3'- cgUCGugUUCGG--CCGAuaGCUCuGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 9883 | 0.69 | 0.513522 |
Target: 5'- -aGGCGCGGGCCGcCU-UCGGGGuCGGg -3' miRNA: 3'- cgUCGUGUUCGGCcGAuAGCUCU-GCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 5901 | 0.69 | 0.557047 |
Target: 5'- gGCGGacaGCGGGCCGGCcuucuUCGAuaccaGCGGg -3' miRNA: 3'- -CGUCg--UGUUCGGCCGau---AGCUc----UGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 10465 | 0.69 | 0.557047 |
Target: 5'- aGCcGCACAAuccuGCCGuuCUAUgGAGGCGGu -3' miRNA: 3'- -CGuCGUGUU----CGGCc-GAUAgCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 21644 | 0.69 | 0.557047 |
Target: 5'- gGCAGCguggaGC-AGCgGGCUAUCGAGuuCGc -3' miRNA: 3'- -CGUCG-----UGuUCGgCCGAUAGCUCu-GCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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