miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22339 3' -54.1 NC_005045.1 + 1047 0.74 0.285051
Target:  5'- cGCGGCACAAGCCauaGGCgcaaGGGACa- -3'
miRNA:   3'- -CGUCGUGUUCGG---CCGauagCUCUGcc -5'
22339 3' -54.1 NC_005045.1 + 3076 0.68 0.612786
Target:  5'- aGCAGCACGucgaAGCCuucGgaGUCGAGAucaCGGc -3'
miRNA:   3'- -CGUCGUGU----UCGGc--CgaUAGCUCU---GCC- -5'
22339 3' -54.1 NC_005045.1 + 5021 0.66 0.724192
Target:  5'- aGCAGCuu-GGCCGGUgcgcUGUCGcugaaGCGGa -3'
miRNA:   3'- -CGUCGuguUCGGCCG----AUAGCuc---UGCC- -5'
22339 3' -54.1 NC_005045.1 + 5901 0.69 0.557047
Target:  5'- gGCGGacaGCGGGCCGGCcuucuUCGAuaccaGCGGg -3'
miRNA:   3'- -CGUCg--UGUUCGGCCGau---AGCUc----UGCC- -5'
22339 3' -54.1 NC_005045.1 + 5917 0.66 0.702296
Target:  5'- uGCccuGCGCGAuGCCGGaaua-GAGAUGGa -3'
miRNA:   3'- -CGu--CGUGUU-CGGCCgauagCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 6045 0.72 0.374793
Target:  5'- gGUAGgucaACGGGCCGGCcugUAUUGGGACGa -3'
miRNA:   3'- -CGUCg---UGUUCGGCCG---AUAGCUCUGCc -5'
22339 3' -54.1 NC_005045.1 + 6182 0.7 0.49228
Target:  5'- -aGGCugAGGCCgaGGCUcgUGAG-CGGg -3'
miRNA:   3'- cgUCGugUUCGG--CCGAuaGCUCuGCC- -5'
22339 3' -54.1 NC_005045.1 + 6962 0.66 0.702296
Target:  5'- gGCcGC-CGAGCUGGCUGgugcCGAGAUc- -3'
miRNA:   3'- -CGuCGuGUUCGGCCGAUa---GCUCUGcc -5'
22339 3' -54.1 NC_005045.1 + 9883 0.69 0.513522
Target:  5'- -aGGCGCGGGCCGcCU-UCGGGGuCGGg -3'
miRNA:   3'- cgUCGUGUUCGGCcGAuAGCUCU-GCC- -5'
22339 3' -54.1 NC_005045.1 + 10465 0.69 0.557047
Target:  5'- aGCcGCACAAuccuGCCGuuCUAUgGAGGCGGu -3'
miRNA:   3'- -CGuCGUGUU----CGGCc-GAUAgCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 10598 0.71 0.411845
Target:  5'- -aAGCGCAAGCCGGagAUCaccguuGACGGg -3'
miRNA:   3'- cgUCGUGUUCGGCCgaUAGcu----CUGCC- -5'
22339 3' -54.1 NC_005045.1 + 12032 0.67 0.63527
Target:  5'- uGCGGUACAagGGCCGGgUGcCGuacgaAGAUGGc -3'
miRNA:   3'- -CGUCGUGU--UCGGCCgAUaGC-----UCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 12442 0.66 0.691235
Target:  5'- aGCGGCGacgcccucaAGGCUcuggagaaacagGGCU-UCGAGGCGGc -3'
miRNA:   3'- -CGUCGUg--------UUCGG------------CCGAuAGCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 12774 0.66 0.722018
Target:  5'- cGCGGCu---GCCGGCUuccggGUCGuccucguccuucGACGGg -3'
miRNA:   3'- -CGUCGuguuCGGCCGA-----UAGCu-----------CUGCC- -5'
22339 3' -54.1 NC_005045.1 + 13014 0.67 0.63527
Target:  5'- uCGGCGCAGuaCGGCg--CGAGuGCGGc -3'
miRNA:   3'- cGUCGUGUUcgGCCGauaGCUC-UGCC- -5'
22339 3' -54.1 NC_005045.1 + 14405 0.66 0.702296
Target:  5'- aCGGaACAGGCCgGGCUugAUCGAGccguCGGc -3'
miRNA:   3'- cGUCgUGUUCGG-CCGA--UAGCUCu---GCC- -5'
22339 3' -54.1 NC_005045.1 + 14820 0.66 0.702296
Target:  5'- gGUAGCAaccuGCCGGCagugcccaacGUCGcGGCGGa -3'
miRNA:   3'- -CGUCGUguu-CGGCCGa---------UAGCuCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 14940 0.67 0.668946
Target:  5'- uGCGGgAC-AGCCGGUacagcaGGGGCGGc -3'
miRNA:   3'- -CGUCgUGuUCGGCCGauag--CUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 15386 0.66 0.692344
Target:  5'- cGCuGCgGCGGGCCguGGCggacguguacgagCGAGGCGGg -3'
miRNA:   3'- -CGuCG-UGUUCGG--CCGaua----------GCUCUGCC- -5'
22339 3' -54.1 NC_005045.1 + 18030 0.7 0.49228
Target:  5'- aGCAGCAgAucGCCcacgaagaGGCccuUGUCGGGGCGGc -3'
miRNA:   3'- -CGUCGUgUu-CGG--------CCG---AUAGCUCUGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.