Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22339 | 3' | -54.1 | NC_005045.1 | + | 6962 | 0.66 | 0.702296 |
Target: 5'- gGCcGC-CGAGCUGGCUGgugcCGAGAUc- -3' miRNA: 3'- -CGuCGuGUUCGGCCGAUa---GCUCUGcc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 21644 | 0.69 | 0.557047 |
Target: 5'- gGCAGCguggaGC-AGCgGGCUAUCGAGuuCGc -3' miRNA: 3'- -CGUCG-----UGuUCGgCCGAUAGCUCu-GCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 26056 | 0.68 | 0.56478 |
Target: 5'- cGCAGCACcguGgCGaGCUGUaccuguucgacgagCGGGACGGu -3' miRNA: 3'- -CGUCGUGuu-CgGC-CGAUA--------------GCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 12032 | 0.67 | 0.63527 |
Target: 5'- uGCGGUACAagGGCCGGgUGcCGuacgaAGAUGGc -3' miRNA: 3'- -CGUCGUGU--UCGGCCgAUaGC-----UCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 13014 | 0.67 | 0.63527 |
Target: 5'- uCGGCGCAGuaCGGCg--CGAGuGCGGc -3' miRNA: 3'- cGUCGUGUUcgGCCGauaGCUC-UGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 19584 | 0.67 | 0.657742 |
Target: 5'- cCAGCACuacUCGGCUAUucucCGGGACGa -3' miRNA: 3'- cGUCGUGuucGGCCGAUA----GCUCUGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 12442 | 0.66 | 0.691235 |
Target: 5'- aGCGGCGacgcccucaAGGCUcuggagaaacagGGCU-UCGAGGCGGc -3' miRNA: 3'- -CGUCGUg--------UUCGG------------CCGAuAGCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 15386 | 0.66 | 0.692344 |
Target: 5'- cGCuGCgGCGGGCCguGGCggacguguacgagCGAGGCGGg -3' miRNA: 3'- -CGuCG-UGUUCGG--CCGaua----------GCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 5917 | 0.66 | 0.702296 |
Target: 5'- uGCccuGCGCGAuGCCGGaaua-GAGAUGGa -3' miRNA: 3'- -CGu--CGUGUU-CGGCCgauagCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 10465 | 0.69 | 0.557047 |
Target: 5'- aGCcGCACAAuccuGCCGuuCUAUgGAGGCGGu -3' miRNA: 3'- -CGuCGUGUU----CGGCc-GAUAgCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 18030 | 0.7 | 0.49228 |
Target: 5'- aGCAGCAgAucGCCcacgaagaGGCccuUGUCGGGGCGGc -3' miRNA: 3'- -CGUCGUgUu-CGG--------CCG---AUAGCUCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 6182 | 0.7 | 0.49228 |
Target: 5'- -aGGCugAGGCCgaGGCUcgUGAG-CGGg -3' miRNA: 3'- cgUCGugUUCGG--CCGAuaGCUCuGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 30775 | 0.75 | 0.263715 |
Target: 5'- aGCAGCACAAGCCGcaUGUCGAagGACu- -3' miRNA: 3'- -CGUCGUGUUCGGCcgAUAGCU--CUGcc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 1047 | 0.74 | 0.285051 |
Target: 5'- cGCGGCACAAGCCauaGGCgcaaGGGACa- -3' miRNA: 3'- -CGUCGUGUUCGG---CCGauagCUCUGcc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 20096 | 0.74 | 0.292459 |
Target: 5'- cCGGCuGCGGGCCgaGGCUGUCGAGuACGu -3' miRNA: 3'- cGUCG-UGUUCGG--CCGAUAGCUC-UGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 6045 | 0.72 | 0.374793 |
Target: 5'- gGUAGgucaACGGGCCGGCcugUAUUGGGACGa -3' miRNA: 3'- -CGUCg---UGUUCGGCCG---AUAGCUCUGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 10598 | 0.71 | 0.411845 |
Target: 5'- -aAGCGCAAGCCGGagAUCaccguuGACGGg -3' miRNA: 3'- cgUCGUGUUCGGCCgaUAGcu----CUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 26531 | 0.71 | 0.431202 |
Target: 5'- cGCGGCAaccauAGCCGGCUAccucaaccaaCGGGGCGu -3' miRNA: 3'- -CGUCGUgu---UCGGCCGAUa---------GCUCUGCc -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 37746 | 0.7 | 0.461208 |
Target: 5'- aGUGGCAC--GCCGaGCUAcUCGaAGACGGc -3' miRNA: 3'- -CGUCGUGuuCGGC-CGAU-AGC-UCUGCC- -5' |
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22339 | 3' | -54.1 | NC_005045.1 | + | 20796 | 0.7 | 0.471453 |
Target: 5'- cCAGUucCAGGCCGGUcggCGAGACGu -3' miRNA: 3'- cGUCGu-GUUCGGCCGauaGCUCUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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