miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22339 5' -62.6 NC_005045.1 + 22851 1.1 0.000114
Target:  5'- cGCCCUGUCCCGCUCCGCCGCUGUGCAg -3'
miRNA:   3'- -CGGGACAGGGCGAGGCGGCGACACGU- -5'
22339 5' -62.6 NC_005045.1 + 23977 0.69 0.167323
Target:  5'- uGCCCUGgca-GCUCUGuCCGCUGaGCAa -3'
miRNA:   3'- -CGGGACagggCGAGGC-GGCGACaCGU- -5'
22339 5' -62.6 NC_005045.1 + 26774 0.68 0.194457
Target:  5'- gGCCCcgguauacuucgagUGggaUUCCGCUaaCCGCCGCUGgGCAg -3'
miRNA:   3'- -CGGG--------------AC---AGGGCGA--GGCGGCGACaCGU- -5'
22339 5' -62.6 NC_005045.1 + 23420 0.67 0.246965
Target:  5'- gGCCCcgGUa--GCUCCGCCGgCUgcggGUGCAg -3'
miRNA:   3'- -CGGGa-CAgggCGAGGCGGC-GA----CACGU- -5'
22339 5' -62.6 NC_005045.1 + 41221 0.66 0.266252
Target:  5'- -gCCUGUgcaaCCGCcCCGgcgcCCGCUGUGCu -3'
miRNA:   3'- cgGGACAg---GGCGaGGC----GGCGACACGu -5'
22339 5' -62.6 NC_005045.1 + 34009 0.84 0.012069
Target:  5'- aGCCCUGUCCCGCgcCCGCUGCacaauggccUGUGCGa -3'
miRNA:   3'- -CGGGACAGGGCGa-GGCGGCG---------ACACGU- -5'
22339 5' -62.6 NC_005045.1 + 12520 0.68 0.225365
Target:  5'- aGCCCUGUUUCuccagagccuugaggGCgUCGCCGCUGgUGCu -3'
miRNA:   3'- -CGGGACAGGG---------------CGaGGCGGCGAC-ACGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.