Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22339 | 5' | -62.6 | NC_005045.1 | + | 22851 | 1.1 | 0.000114 |
Target: 5'- cGCCCUGUCCCGCUCCGCCGCUGUGCAg -3' miRNA: 3'- -CGGGACAGGGCGAGGCGGCGACACGU- -5' |
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22339 | 5' | -62.6 | NC_005045.1 | + | 23977 | 0.69 | 0.167323 |
Target: 5'- uGCCCUGgca-GCUCUGuCCGCUGaGCAa -3' miRNA: 3'- -CGGGACagggCGAGGC-GGCGACaCGU- -5' |
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22339 | 5' | -62.6 | NC_005045.1 | + | 26774 | 0.68 | 0.194457 |
Target: 5'- gGCCCcgguauacuucgagUGggaUUCCGCUaaCCGCCGCUGgGCAg -3' miRNA: 3'- -CGGG--------------AC---AGGGCGA--GGCGGCGACaCGU- -5' |
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22339 | 5' | -62.6 | NC_005045.1 | + | 23420 | 0.67 | 0.246965 |
Target: 5'- gGCCCcgGUa--GCUCCGCCGgCUgcggGUGCAg -3' miRNA: 3'- -CGGGa-CAgggCGAGGCGGC-GA----CACGU- -5' |
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22339 | 5' | -62.6 | NC_005045.1 | + | 41221 | 0.66 | 0.266252 |
Target: 5'- -gCCUGUgcaaCCGCcCCGgcgcCCGCUGUGCu -3' miRNA: 3'- cgGGACAg---GGCGaGGC----GGCGACACGu -5' |
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22339 | 5' | -62.6 | NC_005045.1 | + | 34009 | 0.84 | 0.012069 |
Target: 5'- aGCCCUGUCCCGCgcCCGCUGCacaauggccUGUGCGa -3' miRNA: 3'- -CGGGACAGGGCGa-GGCGGCG---------ACACGU- -5' |
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22339 | 5' | -62.6 | NC_005045.1 | + | 12520 | 0.68 | 0.225365 |
Target: 5'- aGCCCUGUUUCuccagagccuugaggGCgUCGCCGCUGgUGCu -3' miRNA: 3'- -CGGGACAGGG---------------CGaGGCGGCGAC-ACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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