miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2234 5' -52.8 NC_001405.1 + 34686 0.66 0.700469
Target:  5'- -aAGGUgGAGG---GCGCUCUGgaGCa -3'
miRNA:   3'- agUCCAaUUCCgagUGCGAGACgaCG- -5'
2234 5' -52.8 NC_001405.1 + 25092 0.67 0.670458
Target:  5'- gUCGGc---AGGCUCGCGCgUCUcaagccagcgcgccaGCUGCu -3'
miRNA:   3'- -AGUCcaauUCCGAGUGCG-AGA---------------CGACG- -5'
2234 5' -52.8 NC_001405.1 + 12742 0.67 0.642506
Target:  5'- cCAGGUUGcccuGCUgcugcgCGCGCUCacGCUGCg -3'
miRNA:   3'- aGUCCAAUuc--CGA------GUGCGAGa-CGACG- -5'
2234 5' -52.8 NC_001405.1 + 33188 0.67 0.627329
Target:  5'- aUCAGGaUAGGGCgguggugcugcagcaGCGCgcgaauaaaCUGCUGCc -3'
miRNA:   3'- -AGUCCaAUUCCGag-------------UGCGa--------GACGACG- -5'
2234 5' -52.8 NC_001405.1 + 26919 0.67 0.617991
Target:  5'- aCGGGUUcguuGGGCgccagacgcaGCGCUCcuccuccUGCUGCu -3'
miRNA:   3'- aGUCCAAu---UCCGag--------UGCGAG-------ACGACG- -5'
2234 5' -52.8 NC_001405.1 + 5217 0.68 0.549762
Target:  5'- gCGGGUUGGGGCg---GCUUUcGCUGUa -3'
miRNA:   3'- aGUCCAAUUCCGagugCGAGA-CGACG- -5'
2234 5' -52.8 NC_001405.1 + 10080 0.69 0.537265
Target:  5'- cCAGGUc--GGCgacaaCGCGCUCggcuaauauggccUGCUGCa -3'
miRNA:   3'- aGUCCAauuCCGa----GUGCGAG-------------ACGACG- -5'
2234 5' -52.8 NC_001405.1 + 2246 0.71 0.420297
Target:  5'- cUCGGGUUccauGGGCUC-UGCUcCUGCcGCc -3'
miRNA:   3'- -AGUCCAAu---UCCGAGuGCGA-GACGaCG- -5'
2234 5' -52.8 NC_001405.1 + 5321 0.71 0.420297
Target:  5'- gUCAcGGUgAAGGggUGCGCUCcggGCUGCg -3'
miRNA:   3'- -AGU-CCAaUUCCgaGUGCGAGa--CGACG- -5'
2234 5' -52.8 NC_001405.1 + 12400 0.72 0.362816
Target:  5'- -uGGaGUUAAGGCcggacggCugGCUCUGCaGCg -3'
miRNA:   3'- agUC-CAAUUCCGa------GugCGAGACGaCG- -5'
2234 5' -52.8 NC_001405.1 + 13330 1.14 0.000405
Target:  5'- aUCAGGUUAAGGCUCACGCUCUGCUGCa -3'
miRNA:   3'- -AGUCCAAUUCCGAGUGCGAGACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.