miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22340 5' -55.7 NC_005045.1 + 18050 0.66 0.608417
Target:  5'- gAGGcCCUUGUcgGGgcGGCGCagaaCGACg -3'
miRNA:   3'- -UCU-GGAACGa-CCuuCCGCGaag-GCUG- -5'
22340 5' -55.7 NC_005045.1 + 8629 0.66 0.608417
Target:  5'- gGGGCCUcggUGCUGGuGGcaGCGCcUCCuGAUg -3'
miRNA:   3'- -UCUGGA---ACGACCuUC--CGCGaAGG-CUG- -5'
22340 5' -55.7 NC_005045.1 + 8567 0.66 0.585898
Target:  5'- gGGACCacggaaucaagUUGCcGGGgcuGGUGCUgCCGGCg -3'
miRNA:   3'- -UCUGG-----------AACGaCCUu--CCGCGAaGGCUG- -5'
22340 5' -55.7 NC_005045.1 + 13268 0.66 0.585897
Target:  5'- cGGCCccaucucGCU-GAAGGCGCcugCCGGCa -3'
miRNA:   3'- uCUGGaa-----CGAcCUUCCGCGaa-GGCUG- -5'
22340 5' -55.7 NC_005045.1 + 2198 0.67 0.541417
Target:  5'- -aGCCUUGC-GGAAgaucgggcagucGGCGCcUUUCGGCa -3'
miRNA:   3'- ucUGGAACGaCCUU------------CCGCG-AAGGCUG- -5'
22340 5' -55.7 NC_005045.1 + 4888 0.67 0.51959
Target:  5'- cGACgagGCUGGAcAGGCGCU--CGGCg -3'
miRNA:   3'- uCUGgaaCGACCU-UCCGCGAagGCUG- -5'
22340 5' -55.7 NC_005045.1 + 15856 0.67 0.498119
Target:  5'- gAGGCCgaggUGCUGuGGAuGCGCcgaacgCCGACu -3'
miRNA:   3'- -UCUGGa---ACGAC-CUUcCGCGaa----GGCUG- -5'
22340 5' -55.7 NC_005045.1 + 28949 0.69 0.397649
Target:  5'- uGGCCcgGCUGGAGuuGCGUcugUCCGACg -3'
miRNA:   3'- uCUGGaaCGACCUUc-CGCGa--AGGCUG- -5'
22340 5' -55.7 NC_005045.1 + 7689 0.72 0.252827
Target:  5'- cGACgCggGCUGGAuuGGGCGCgcuacugCCGACc -3'
miRNA:   3'- uCUG-GaaCGACCU--UCCGCGaa-----GGCUG- -5'
22340 5' -55.7 NC_005045.1 + 23079 1.1 0.000444
Target:  5'- gAGACCUUGCUGGAAGGCGCUUCCGACa -3'
miRNA:   3'- -UCUGGAACGACCUUCCGCGAAGGCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.