miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22341 3' -60.2 NC_005045.1 + 22755 0.66 0.422412
Target:  5'- gCCGCUGGCCUacgUCugcCUCuCCGA-GGuGGAu -3'
miRNA:   3'- -GGCGGCCGGA---AGu--GAG-GGUUgCC-CCU- -5'
22341 3' -60.2 NC_005045.1 + 29572 0.66 0.404134
Target:  5'- gCgGCCaGCCUggaCAUgaaCCAGCGGGGc -3'
miRNA:   3'- -GgCGGcCGGAa--GUGag-GGUUGCCCCu -5'
22341 3' -60.2 NC_005045.1 + 37554 0.66 0.395185
Target:  5'- cCUGCCGGagu---CUCCCAGCGGaGGu -3'
miRNA:   3'- -GGCGGCCggaaguGAGGGUUGCC-CCu -5'
22341 3' -60.2 NC_005045.1 + 35099 0.67 0.376814
Target:  5'- uCCGUagcuuugUGGCCUUCgcgcacaacaaGCUCCUc-CGGGGAa -3'
miRNA:   3'- -GGCG-------GCCGGAAG-----------UGAGGGuuGCCCCU- -5'
22341 3' -60.2 NC_005045.1 + 20958 0.67 0.360695
Target:  5'- gCGCCGGCCUUUgcguggACUCgCCAGauGGa- -3'
miRNA:   3'- gGCGGCCGGAAG------UGAG-GGUUgcCCcu -5'
22341 3' -60.2 NC_005045.1 + 26543 0.68 0.320618
Target:  5'- -aGCCGGCUaccUCAa--CCAACGGGGc -3'
miRNA:   3'- ggCGGCCGGa--AGUgagGGUUGCCCCu -5'
22341 3' -60.2 NC_005045.1 + 15449 0.68 0.305547
Target:  5'- uCCGCCacGGCCcgccgcagCGgUUCCAGCaGGGGAg -3'
miRNA:   3'- -GGCGG--CCGGaa------GUgAGGGUUG-CCCCU- -5'
22341 3' -60.2 NC_005045.1 + 5039 0.68 0.298217
Target:  5'- gCGCUGGCCUUCACgUCCAGCa---- -3'
miRNA:   3'- gGCGGCCGGAAGUGaGGGUUGccccu -5'
22341 3' -60.2 NC_005045.1 + 35299 0.69 0.263615
Target:  5'- aCUGCCGGCCUcggcuUCAC-CgCCGACauguGGGGc -3'
miRNA:   3'- -GGCGGCCGGA-----AGUGaG-GGUUG----CCCCu -5'
22341 3' -60.2 NC_005045.1 + 34495 0.7 0.226477
Target:  5'- gCCGCUGGCC--CGCUgUgCAACGGGGc -3'
miRNA:   3'- -GGCGGCCGGaaGUGA-GgGUUGCCCCu -5'
22341 3' -60.2 NC_005045.1 + 5890 0.72 0.174478
Target:  5'- -gGCCGGCCUUCuuCgauaCCAGCGGGa- -3'
miRNA:   3'- ggCGGCCGGAAGu-Gag--GGUUGCCCcu -5'
22341 3' -60.2 NC_005045.1 + 18255 0.75 0.095909
Target:  5'- cCCGCC-GCCUUCGCuUCCUggUGGGcGAa -3'
miRNA:   3'- -GGCGGcCGGAAGUG-AGGGuuGCCC-CU- -5'
22341 3' -60.2 NC_005045.1 + 23480 1.1 0.000231
Target:  5'- gCCGCCGGCCUUCACUCCCAACGGGGAg -3'
miRNA:   3'- -GGCGGCCGGAAGUGAGGGUUGCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.