Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22341 | 3' | -60.2 | NC_005045.1 | + | 22755 | 0.66 | 0.422412 |
Target: 5'- gCCGCUGGCCUacgUCugcCUCuCCGA-GGuGGAu -3' miRNA: 3'- -GGCGGCCGGA---AGu--GAG-GGUUgCC-CCU- -5' |
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22341 | 3' | -60.2 | NC_005045.1 | + | 29572 | 0.66 | 0.404134 |
Target: 5'- gCgGCCaGCCUggaCAUgaaCCAGCGGGGc -3' miRNA: 3'- -GgCGGcCGGAa--GUGag-GGUUGCCCCu -5' |
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22341 | 3' | -60.2 | NC_005045.1 | + | 37554 | 0.66 | 0.395185 |
Target: 5'- cCUGCCGGagu---CUCCCAGCGGaGGu -3' miRNA: 3'- -GGCGGCCggaaguGAGGGUUGCC-CCu -5' |
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22341 | 3' | -60.2 | NC_005045.1 | + | 35099 | 0.67 | 0.376814 |
Target: 5'- uCCGUagcuuugUGGCCUUCgcgcacaacaaGCUCCUc-CGGGGAa -3' miRNA: 3'- -GGCG-------GCCGGAAG-----------UGAGGGuuGCCCCU- -5' |
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22341 | 3' | -60.2 | NC_005045.1 | + | 20958 | 0.67 | 0.360695 |
Target: 5'- gCGCCGGCCUUUgcguggACUCgCCAGauGGa- -3' miRNA: 3'- gGCGGCCGGAAG------UGAG-GGUUgcCCcu -5' |
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22341 | 3' | -60.2 | NC_005045.1 | + | 26543 | 0.68 | 0.320618 |
Target: 5'- -aGCCGGCUaccUCAa--CCAACGGGGc -3' miRNA: 3'- ggCGGCCGGa--AGUgagGGUUGCCCCu -5' |
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22341 | 3' | -60.2 | NC_005045.1 | + | 15449 | 0.68 | 0.305547 |
Target: 5'- uCCGCCacGGCCcgccgcagCGgUUCCAGCaGGGGAg -3' miRNA: 3'- -GGCGG--CCGGaa------GUgAGGGUUG-CCCCU- -5' |
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22341 | 3' | -60.2 | NC_005045.1 | + | 5039 | 0.68 | 0.298217 |
Target: 5'- gCGCUGGCCUUCACgUCCAGCa---- -3' miRNA: 3'- gGCGGCCGGAAGUGaGGGUUGccccu -5' |
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22341 | 3' | -60.2 | NC_005045.1 | + | 35299 | 0.69 | 0.263615 |
Target: 5'- aCUGCCGGCCUcggcuUCAC-CgCCGACauguGGGGc -3' miRNA: 3'- -GGCGGCCGGA-----AGUGaG-GGUUG----CCCCu -5' |
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22341 | 3' | -60.2 | NC_005045.1 | + | 34495 | 0.7 | 0.226477 |
Target: 5'- gCCGCUGGCC--CGCUgUgCAACGGGGc -3' miRNA: 3'- -GGCGGCCGGaaGUGA-GgGUUGCCCCu -5' |
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22341 | 3' | -60.2 | NC_005045.1 | + | 5890 | 0.72 | 0.174478 |
Target: 5'- -gGCCGGCCUUCuuCgauaCCAGCGGGa- -3' miRNA: 3'- ggCGGCCGGAAGu-Gag--GGUUGCCCcu -5' |
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22341 | 3' | -60.2 | NC_005045.1 | + | 18255 | 0.75 | 0.095909 |
Target: 5'- cCCGCC-GCCUUCGCuUCCUggUGGGcGAa -3' miRNA: 3'- -GGCGGcCGGAAGUG-AGGGuuGCCC-CU- -5' |
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22341 | 3' | -60.2 | NC_005045.1 | + | 23480 | 1.1 | 0.000231 |
Target: 5'- gCCGCCGGCCUUCACUCCCAACGGGGAg -3' miRNA: 3'- -GGCGGCCGGAAGUGAGGGUUGCCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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