miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22341 5' -56.5 NC_005045.1 + 126 0.75 0.172675
Target:  5'- gCAUCCUGGCGGGAgugucAACCcugCGguGGCGu -3'
miRNA:   3'- -GUGGGACCGUCCU-----UUGGa--GCuuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 886 0.69 0.366724
Target:  5'- gCGCCCUGGCgAGGGuauuGACa-CGuGGGCGg -3'
miRNA:   3'- -GUGGGACCG-UCCU----UUGgaGCuUCCGC- -5'
22341 5' -56.5 NC_005045.1 + 1024 0.7 0.316707
Target:  5'- aACCCUGucucCAGGcuGCCUaUGGAGGCGg -3'
miRNA:   3'- gUGGGACc---GUCCuuUGGA-GCUUCCGC- -5'
22341 5' -56.5 NC_005045.1 + 4523 0.66 0.549906
Target:  5'- uCACCUUGGCAGG--GCCgUCGucauggauaaccacGGGCa -3'
miRNA:   3'- -GUGGGACCGUCCuuUGG-AGCu-------------UCCGc -5'
22341 5' -56.5 NC_005045.1 + 6226 0.66 0.566325
Target:  5'- gACaCCUGGCAGGcagcAACCuucgcagccaccaUCGccGGCGg -3'
miRNA:   3'- gUG-GGACCGUCCu---UUGG-------------AGCuuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 6861 0.69 0.375572
Target:  5'- gGCCUgaUGGUAGGuuccuGCCUCGuaguAGGUGg -3'
miRNA:   3'- gUGGG--ACCGUCCuu---UGGAGCu---UCCGC- -5'
22341 5' -56.5 NC_005045.1 + 6936 0.68 0.455333
Target:  5'- cCACCUacuacgaGGCAGGAAccuACCaucaggccggacaggUCGAAGGCa -3'
miRNA:   3'- -GUGGGa------CCGUCCUU---UGG---------------AGCUUCCGc -5'
22341 5' -56.5 NC_005045.1 + 7535 0.74 0.182426
Target:  5'- uGCCCUGGCccgAGGAuGCCUCGGAcuGGaCGc -3'
miRNA:   3'- gUGGGACCG---UCCUuUGGAGCUU--CC-GC- -5'
22341 5' -56.5 NC_005045.1 + 9479 0.66 0.545552
Target:  5'- uCGCCCUGGCcgguGGGuucccucgcGACCUCaugcauGGCGc -3'
miRNA:   3'- -GUGGGACCGu---CCU---------UUGGAGcuu---CCGC- -5'
22341 5' -56.5 NC_005045.1 + 11229 0.73 0.214644
Target:  5'- gUACCC-GGCGGGGAAUCUCGuucaucAGGUGc -3'
miRNA:   3'- -GUGGGaCCGUCCUUUGGAGCu-----UCCGC- -5'
22341 5' -56.5 NC_005045.1 + 12449 0.68 0.460367
Target:  5'- aCGCCCUcaaGGCucuGGAGaaacaggGCUUCGA-GGCGg -3'
miRNA:   3'- -GUGGGA---CCGu--CCUU-------UGGAGCUuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 12520 0.67 0.513283
Target:  5'- aGCCCUGuuucucCAG--AGCCUUGAGGGCGu -3'
miRNA:   3'- gUGGGACc-----GUCcuUUGGAGCUUCCGC- -5'
22341 5' -56.5 NC_005045.1 + 15097 0.68 0.451328
Target:  5'- -uUCCUGGCAGGAcuACCcgagcaguUCGAccgcagcauggcAGGCGg -3'
miRNA:   3'- guGGGACCGUCCUu-UGG--------AGCU------------UCCGC- -5'
22341 5' -56.5 NC_005045.1 + 16929 0.73 0.214644
Target:  5'- gCGCCCUGGCAGuccauguaGAucACCUCGucGGUGu -3'
miRNA:   3'- -GUGGGACCGUC--------CUu-UGGAGCuuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 17892 0.67 0.471544
Target:  5'- -cUCCUcGGuCAGGGccACCUCGgcGGCGg -3'
miRNA:   3'- guGGGA-CC-GUCCUu-UGGAGCuuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 20227 0.66 0.578446
Target:  5'- cCGCCCUGGCcugcgcagcggAGGAuauCC-CGAuccAGGCc -3'
miRNA:   3'- -GUGGGACCG-----------UCCUuu-GGaGCU---UCCGc -5'
22341 5' -56.5 NC_005045.1 + 20995 0.66 0.578446
Target:  5'- aGCCCUGGaAGcGAugcuuGACaguaUCGAGGGCa -3'
miRNA:   3'- gUGGGACCgUC-CU-----UUGg---AGCUUCCGc -5'
22341 5' -56.5 NC_005045.1 + 23063 0.75 0.172675
Target:  5'- gGCCCaGGCcgcgcAGGAGACCUUgcugGAAGGCGc -3'
miRNA:   3'- gUGGGaCCG-----UCCUUUGGAG----CUUCCGC- -5'
22341 5' -56.5 NC_005045.1 + 23515 1.09 0.000543
Target:  5'- gCACCCUGGCAGGAAACCUCGAAGGCGa -3'
miRNA:   3'- -GUGGGACCGUCCUUUGGAGCUUCCGC- -5'
22341 5' -56.5 NC_005045.1 + 23977 0.69 0.412376
Target:  5'- uGCCCUGGCAGcucuguccgcuGAGcaauACCgagCGGAGGUa -3'
miRNA:   3'- gUGGGACCGUC-----------CUU----UGGa--GCUUCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.