miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22341 5' -56.5 NC_005045.1 + 25935 0.66 0.556457
Target:  5'- gGCCC-GGCAGGcg--CUCGAAGGgCa -3'
miRNA:   3'- gUGGGaCCGUCCuuugGAGCUUCC-Gc -5'
22341 5' -56.5 NC_005045.1 + 26074 0.66 0.556457
Target:  5'- cCACCgaGGUucgugugguagAGGAAcgGCCUCGGccaGGGCu -3'
miRNA:   3'- -GUGGgaCCG-----------UCCUU--UGGAGCU---UCCGc -5'
22341 5' -56.5 NC_005045.1 + 17892 0.67 0.471544
Target:  5'- -cUCCUcGGuCAGGGccACCUCGgcGGCGg -3'
miRNA:   3'- guGGGA-CC-GUCCUu-UGGAGCuuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 6936 0.68 0.455333
Target:  5'- cCACCUacuacgaGGCAGGAAccuACCaucaggccggacaggUCGAAGGCa -3'
miRNA:   3'- -GUGGGa------CCGUCCUU---UGG---------------AGCUUCCGc -5'
22341 5' -56.5 NC_005045.1 + 32643 0.68 0.451328
Target:  5'- cCACCUUGGCGGcGAugcCCUgGAGcGGCu -3'
miRNA:   3'- -GUGGGACCGUC-CUuu-GGAgCUU-CCGc -5'
22341 5' -56.5 NC_005045.1 + 35833 0.68 0.431595
Target:  5'- uGCCCUGGCuGaacugcguguccGGGACCUgGGcAGGCGu -3'
miRNA:   3'- gUGGGACCGuC------------CUUUGGAgCU-UCCGC- -5'
22341 5' -56.5 NC_005045.1 + 30893 0.69 0.402967
Target:  5'- uGCCgCUGGUGcGGucguaCUCGAAGGCGa -3'
miRNA:   3'- gUGG-GACCGU-CCuuug-GAGCUUCCGC- -5'
22341 5' -56.5 NC_005045.1 + 29586 0.7 0.358021
Target:  5'- gCACCUccaGCGGGAuauCCUCGGAGGUc -3'
miRNA:   3'- -GUGGGac-CGUCCUuu-GGAGCUUCCGc -5'
22341 5' -56.5 NC_005045.1 + 1024 0.7 0.316707
Target:  5'- aACCCUGucucCAGGcuGCCUaUGGAGGCGg -3'
miRNA:   3'- gUGGGACc---GUCCuuUGGA-GCUUCCGC- -5'
22341 5' -56.5 NC_005045.1 + 11229 0.73 0.214644
Target:  5'- gUACCC-GGCGGGGAAUCUCGuucaucAGGUGc -3'
miRNA:   3'- -GUGGGaCCGUCCUUUGGAGCu-----UCCGC- -5'
22341 5' -56.5 NC_005045.1 + 16929 0.73 0.214644
Target:  5'- gCGCCCUGGCAGuccauguaGAucACCUCGucGGUGu -3'
miRNA:   3'- -GUGGGACCGUC--------CUu-UGGAGCuuCCGC- -5'
22341 5' -56.5 NC_005045.1 + 40148 0.66 0.589513
Target:  5'- -uCCUUcGGCAGuGAGCCUCGGucGGUGg -3'
miRNA:   3'- guGGGA-CCGUCcUUUGGAGCUu-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.