miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22343 3' -62.8 NC_005045.1 + 32630 0.66 0.264967
Target:  5'- gAugCCCUGGaGcgGCUuaGGCACCUcgGCg -3'
miRNA:   3'- -UugGGGACC-Ca-CGAcgCCGUGGA--CGg -5'
22343 3' -62.8 NC_005045.1 + 2748 0.66 0.264967
Target:  5'- uGCCCUUGGu--CUGCGccuggaGCACCUGCUu -3'
miRNA:   3'- uUGGGGACCcacGACGC------CGUGGACGG- -5'
22343 3' -62.8 NC_005045.1 + 7179 0.66 0.262971
Target:  5'- --gCCCUGGGcgUGCUGCucacacagaacaacGGCGgCCcGCCu -3'
miRNA:   3'- uugGGGACCC--ACGACG--------------CCGU-GGaCGG- -5'
22343 3' -62.8 NC_005045.1 + 41519 0.66 0.245553
Target:  5'- --gCCCUGGGcgGCgaggGCGGCGCUaccCCa -3'
miRNA:   3'- uugGGGACCCa-CGa---CGCCGUGGac-GG- -5'
22343 3' -62.8 NC_005045.1 + 42122 0.66 0.243677
Target:  5'- uAGCCuCCUGGGaGCUuccggcuucgccggGUGGCGagggcuucCCUGCCc -3'
miRNA:   3'- -UUGG-GGACCCaCGA--------------CGCCGU--------GGACGG- -5'
22343 3' -62.8 NC_005045.1 + 59 0.66 0.243677
Target:  5'- uAGCCuCCUGGGaGCUuccggcuucgccggGUGGCGagggcuucCCUGCCc -3'
miRNA:   3'- -UUGG-GGACCCaCGA--------------CGCCGU--------GGACGG- -5'
22343 3' -62.8 NC_005045.1 + 15843 0.66 0.239348
Target:  5'- aAACCCgCUGgcggaggccgaGGUGCUGUGgauGCGCCgaacGCCg -3'
miRNA:   3'- -UUGGG-GAC-----------CCACGACGC---CGUGGa---CGG- -5'
22343 3' -62.8 NC_005045.1 + 26714 0.66 0.238735
Target:  5'- uGCCCCUgguguggGGGUGCaguucaugGaCGGCGCUgucaugGCCa -3'
miRNA:   3'- uUGGGGA-------CCCACGa-------C-GCCGUGGa-----CGG- -5'
22343 3' -62.8 NC_005045.1 + 362 0.67 0.227333
Target:  5'- uGCCuCCUGuGGUGguCUGUGGU-CCUGUCg -3'
miRNA:   3'- uUGG-GGAC-CCAC--GACGCCGuGGACGG- -5'
22343 3' -62.8 NC_005045.1 + 42425 0.67 0.227333
Target:  5'- uGCCuCCUGuGGUGguCUGUGGU-CCUGUCg -3'
miRNA:   3'- uUGG-GGAC-CCAC--GACGCCGuGGACGG- -5'
22343 3' -62.8 NC_005045.1 + 27268 0.67 0.225575
Target:  5'- cGACCUCgauaccaggGCGGCACCUGCCg -3'
miRNA:   3'- -UUGGGGacccacga-CGCCGUGGACGG- -5'
22343 3' -62.8 NC_005045.1 + 8783 0.67 0.223829
Target:  5'- gGGCCggCCUGGGUcgaaguaccgcuugaGCUGCGGCGCaaugUGUa -3'
miRNA:   3'- -UUGG--GGACCCA---------------CGACGCCGUGg---ACGg -5'
22343 3' -62.8 NC_005045.1 + 37641 0.67 0.204833
Target:  5'- uGCCCUUccaGGGUGC-GCGGgACCgGCg -3'
miRNA:   3'- uUGGGGA---CCCACGaCGCCgUGGaCGg -5'
22343 3' -62.8 NC_005045.1 + 13268 0.68 0.179444
Target:  5'- cGGCCCCaucucGCUGaaGGCGCCUGCCg -3'
miRNA:   3'- -UUGGGGacccaCGACg-CCGUGGACGG- -5'
22343 3' -62.8 NC_005045.1 + 32647 0.69 0.152694
Target:  5'- -uUCCgUGuGGUGCaggGCGGCGacaCUGCCa -3'
miRNA:   3'- uuGGGgAC-CCACGa--CGCCGUg--GACGG- -5'
22343 3' -62.8 NC_005045.1 + 23366 0.7 0.135803
Target:  5'- cGGCUgCUGGGUcgggauggccaguuGCUGCGGCgcacccACCUGaCCg -3'
miRNA:   3'- -UUGGgGACCCA--------------CGACGCCG------UGGAC-GG- -5'
22343 3' -62.8 NC_005045.1 + 3213 0.71 0.112885
Target:  5'- cGACCgcuaCCUGGGUGCUGaugaggcaGGCACCcGUg -3'
miRNA:   3'- -UUGG----GGACCCACGACg-------CCGUGGaCGg -5'
22343 3' -62.8 NC_005045.1 + 28141 0.72 0.098194
Target:  5'- gAGCCUCUGGuGgauagcGCUGUGGUGCCgcUGCCg -3'
miRNA:   3'- -UUGGGGACC-Ca-----CGACGCCGUGG--ACGG- -5'
22343 3' -62.8 NC_005045.1 + 587 0.73 0.071994
Target:  5'- cGCuCCCUGGGUGCUGgucuaccucccUGGCGCugugcuugugCUGCCg -3'
miRNA:   3'- uUG-GGGACCCACGAC-----------GCCGUG----------GACGG- -5'
22343 3' -62.8 NC_005045.1 + 23954 1.07 0.000135
Target:  5'- cAACCCCUGGGUGCUGCGGCACCUGCCc -3'
miRNA:   3'- -UUGGGGACCCACGACGCCGUGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.