miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22343 5' -55 NC_005045.1 + 20291 0.66 0.651988
Target:  5'- --cUCCGCUGcGCAG-GCCaGGGCGGu -3'
miRNA:   3'- gacAGGCGACuCGUUaUGG-CUCGCCu -5'
22343 5' -55 NC_005045.1 + 10291 0.66 0.640726
Target:  5'- ---cCCGCUGAcCAAgGCCGAGCuGAa -3'
miRNA:   3'- gacaGGCGACUcGUUaUGGCUCGcCU- -5'
22343 5' -55 NC_005045.1 + 3850 0.66 0.629456
Target:  5'- -cGUCCuGCgGA-CAAUACCG-GCGGGc -3'
miRNA:   3'- gaCAGG-CGaCUcGUUAUGGCuCGCCU- -5'
22343 5' -55 NC_005045.1 + 32140 0.66 0.618189
Target:  5'- gCUGgcggCGCUGGGCAAgucggguauguUGCUGGGCuGGAu -3'
miRNA:   3'- -GACag--GCGACUCGUU-----------AUGGCUCG-CCU- -5'
22343 5' -55 NC_005045.1 + 1537 0.68 0.497102
Target:  5'- -aGUauGCUGGGUAGUAUCG-GCGGGc -3'
miRNA:   3'- gaCAggCGACUCGUUAUGGCuCGCCU- -5'
22343 5' -55 NC_005045.1 + 17855 0.69 0.465813
Target:  5'- -gGUCCGCgaugaacggGAGCAagugGUAUCGAGCuGAg -3'
miRNA:   3'- gaCAGGCGa--------CUCGU----UAUGGCUCGcCU- -5'
22343 5' -55 NC_005045.1 + 15378 0.69 0.455611
Target:  5'- gCUGgaaCCGCUGcGGCGG-GCCGuGGCGGAc -3'
miRNA:   3'- -GACa--GGCGAC-UCGUUaUGGC-UCGCCU- -5'
22343 5' -55 NC_005045.1 + 22398 0.7 0.406504
Target:  5'- gCUGUCCcuGCUGAGCGAgaaacucgGCCuguacGAGCuGGAg -3'
miRNA:   3'- -GACAGG--CGACUCGUUa-------UGG-----CUCG-CCU- -5'
22343 5' -55 NC_005045.1 + 34492 0.7 0.397087
Target:  5'- gCUGgcCCGCUGuGCAAcgggGCCGAGCuGGu -3'
miRNA:   3'- -GACa-GGCGACuCGUUa---UGGCUCG-CCu -5'
22343 5' -55 NC_005045.1 + 40009 0.71 0.352165
Target:  5'- gUGUCCuGCc-AGCAGUACCcAGCGGAc -3'
miRNA:   3'- gACAGG-CGacUCGUUAUGGcUCGCCU- -5'
22343 5' -55 NC_005045.1 + 40079 0.74 0.227312
Target:  5'- uUGUCCGCUGGGUAcUGCUG-GCaGGAc -3'
miRNA:   3'- gACAGGCGACUCGUuAUGGCuCG-CCU- -5'
22343 5' -55 NC_005045.1 + 21351 0.77 0.154591
Target:  5'- -gGUCUGCUGGGCAcugACCuGAGCGGu -3'
miRNA:   3'- gaCAGGCGACUCGUua-UGG-CUCGCCu -5'
22343 5' -55 NC_005045.1 + 23989 1.09 0.000741
Target:  5'- uCUGUCCGCUGAGCAAUACCGAGCGGAg -3'
miRNA:   3'- -GACAGGCGACUCGUUAUGGCUCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.