Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22344 | 3' | -55 | NC_005045.1 | + | 41325 | 0.66 | 0.643939 |
Target: 5'- gGUgGUAGGGUcaaucaguGGGUGUucgcacagcacagcgGGCGCcGGGg -3' miRNA: 3'- gCAgCAUUCCG--------UCCAUA---------------CCGCGuCCC- -5' |
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22344 | 3' | -55 | NC_005045.1 | + | 34822 | 0.66 | 0.639467 |
Target: 5'- ---gGUGGcGCGGGc--GGCGCAGGGg -3' miRNA: 3'- gcagCAUUcCGUCCauaCCGCGUCCC- -5' |
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22344 | 3' | -55 | NC_005045.1 | + | 32215 | 0.68 | 0.550647 |
Target: 5'- -aUCGU--GGCGGGUGcucuUGGCGCuggcguGGGu -3' miRNA: 3'- gcAGCAuuCCGUCCAU----ACCGCGu-----CCC- -5' |
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22344 | 3' | -55 | NC_005045.1 | + | 32629 | 0.69 | 0.46493 |
Target: 5'- ----cUGGGGCAGcguaccgcguuccGUGUGGUGCAGGGc -3' miRNA: 3'- gcagcAUUCCGUC-------------CAUACCGCGUCCC- -5' |
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22344 | 3' | -55 | NC_005045.1 | + | 17734 | 0.69 | 0.463914 |
Target: 5'- aGUCGUGAGGCAGGUAgcccuugaccucGGCGg---- -3' miRNA: 3'- gCAGCAUUCCGUCCAUa-----------CCGCguccc -5' |
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22344 | 3' | -55 | NC_005045.1 | + | 10832 | 0.73 | 0.304364 |
Target: 5'- uCGUCGauguGGGCguugAGGUA-GGCGCAGGu -3' miRNA: 3'- -GCAGCau--UCCG----UCCAUaCCGCGUCCc -5' |
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22344 | 3' | -55 | NC_005045.1 | + | 24070 | 1.1 | 0.000671 |
Target: 5'- gCGUCGUAAGGCAGGUAUGGCGCAGGGu -3' miRNA: 3'- -GCAGCAUUCCGUCCAUACCGCGUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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