miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22344 5' -55.5 NC_005045.1 + 1194 0.66 0.608479
Target:  5'- uGCCCUGCaccgugucaguccCCUAagugaugccugCCGGCCUUAcACa -3'
miRNA:   3'- cUGGGACG-------------GGAUga---------GGCCGGAAUuUG- -5'
22344 5' -55.5 NC_005045.1 + 6983 0.66 0.589273
Target:  5'- uACCCUG-CCUGCUgugCCGGUCgucAACg -3'
miRNA:   3'- cUGGGACgGGAUGA---GGCCGGaauUUG- -5'
22344 5' -55.5 NC_005045.1 + 23970 0.68 0.49043
Target:  5'- cGGCaCCUGCCCUggcaGCUCUGuCCgcUGAGCa -3'
miRNA:   3'- -CUG-GGACGGGA----UGAGGCcGGa-AUUUG- -5'
22344 5' -55.5 NC_005045.1 + 40528 0.68 0.478843
Target:  5'- aGCCCUggcggcuGCCCUcg-CCGGCCUUGu-- -3'
miRNA:   3'- cUGGGA-------CGGGAugaGGCCGGAAUuug -5'
22344 5' -55.5 NC_005045.1 + 22851 0.68 0.459153
Target:  5'- cGCCCUGUCCcGCUCC-GCCgcuguGCa -3'
miRNA:   3'- cUGGGACGGGaUGAGGcCGGaauu-UG- -5'
22344 5' -55.5 NC_005045.1 + 30294 0.68 0.459153
Target:  5'- cGCCCUGCUCggcCUCCGGgauaCCUgauAGCa -3'
miRNA:   3'- cUGGGACGGGau-GAGGCC----GGAau-UUG- -5'
22344 5' -55.5 NC_005045.1 + 10149 0.69 0.40951
Target:  5'- -uCCCUGCCCUGga-CGGCCUgGAGg -3'
miRNA:   3'- cuGGGACGGGAUgagGCCGGAaUUUg -5'
22344 5' -55.5 NC_005045.1 + 7324 0.7 0.381375
Target:  5'- aGGCCgCaGCCCgcCUCgGGCCUcGAACa -3'
miRNA:   3'- -CUGG-GaCGGGauGAGgCCGGAaUUUG- -5'
22344 5' -55.5 NC_005045.1 + 2753 0.7 0.372288
Target:  5'- cACCUUGCCCuUGgUCUGcGCCUgGAGCa -3'
miRNA:   3'- cUGGGACGGG-AUgAGGC-CGGAaUUUG- -5'
22344 5' -55.5 NC_005045.1 + 20580 0.73 0.228334
Target:  5'- -uCCCUGaCCuCUACUCUccucuccgagGGCCUUGGACg -3'
miRNA:   3'- cuGGGAC-GG-GAUGAGG----------CCGGAAUUUG- -5'
22344 5' -55.5 NC_005045.1 + 13972 0.94 0.007447
Target:  5'- aGACCCUuCCCUACUCCGGCCUUAAAUc -3'
miRNA:   3'- -CUGGGAcGGGAUGAGGCCGGAAUUUG- -5'
22344 5' -55.5 NC_005045.1 + 24104 1.09 0.000527
Target:  5'- cGACCCUGCCCUACUCCGGCCUUAAACu -3'
miRNA:   3'- -CUGGGACGGGAUGAGGCCGGAAUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.