Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22344 | 5' | -55.5 | NC_005045.1 | + | 1194 | 0.66 | 0.608479 |
Target: 5'- uGCCCUGCaccgugucaguccCCUAagugaugccugCCGGCCUUAcACa -3' miRNA: 3'- cUGGGACG-------------GGAUga---------GGCCGGAAUuUG- -5' |
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22344 | 5' | -55.5 | NC_005045.1 | + | 6983 | 0.66 | 0.589273 |
Target: 5'- uACCCUG-CCUGCUgugCCGGUCgucAACg -3' miRNA: 3'- cUGGGACgGGAUGA---GGCCGGaauUUG- -5' |
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22344 | 5' | -55.5 | NC_005045.1 | + | 23970 | 0.68 | 0.49043 |
Target: 5'- cGGCaCCUGCCCUggcaGCUCUGuCCgcUGAGCa -3' miRNA: 3'- -CUG-GGACGGGA----UGAGGCcGGa-AUUUG- -5' |
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22344 | 5' | -55.5 | NC_005045.1 | + | 40528 | 0.68 | 0.478843 |
Target: 5'- aGCCCUggcggcuGCCCUcg-CCGGCCUUGu-- -3' miRNA: 3'- cUGGGA-------CGGGAugaGGCCGGAAUuug -5' |
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22344 | 5' | -55.5 | NC_005045.1 | + | 22851 | 0.68 | 0.459153 |
Target: 5'- cGCCCUGUCCcGCUCC-GCCgcuguGCa -3' miRNA: 3'- cUGGGACGGGaUGAGGcCGGaauu-UG- -5' |
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22344 | 5' | -55.5 | NC_005045.1 | + | 30294 | 0.68 | 0.459153 |
Target: 5'- cGCCCUGCUCggcCUCCGGgauaCCUgauAGCa -3' miRNA: 3'- cUGGGACGGGau-GAGGCC----GGAau-UUG- -5' |
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22344 | 5' | -55.5 | NC_005045.1 | + | 10149 | 0.69 | 0.40951 |
Target: 5'- -uCCCUGCCCUGga-CGGCCUgGAGg -3' miRNA: 3'- cuGGGACGGGAUgagGCCGGAaUUUg -5' |
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22344 | 5' | -55.5 | NC_005045.1 | + | 7324 | 0.7 | 0.381375 |
Target: 5'- aGGCCgCaGCCCgcCUCgGGCCUcGAACa -3' miRNA: 3'- -CUGG-GaCGGGauGAGgCCGGAaUUUG- -5' |
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22344 | 5' | -55.5 | NC_005045.1 | + | 2753 | 0.7 | 0.372288 |
Target: 5'- cACCUUGCCCuUGgUCUGcGCCUgGAGCa -3' miRNA: 3'- cUGGGACGGG-AUgAGGC-CGGAaUUUG- -5' |
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22344 | 5' | -55.5 | NC_005045.1 | + | 20580 | 0.73 | 0.228334 |
Target: 5'- -uCCCUGaCCuCUACUCUccucuccgagGGCCUUGGACg -3' miRNA: 3'- cuGGGAC-GG-GAUGAGG----------CCGGAAUUUG- -5' |
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22344 | 5' | -55.5 | NC_005045.1 | + | 13972 | 0.94 | 0.007447 |
Target: 5'- aGACCCUuCCCUACUCCGGCCUUAAAUc -3' miRNA: 3'- -CUGGGAcGGGAUGAGGCCGGAAUUUG- -5' |
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22344 | 5' | -55.5 | NC_005045.1 | + | 24104 | 1.09 | 0.000527 |
Target: 5'- cGACCCUGCCCUACUCCGGCCUUAAACu -3' miRNA: 3'- -CUGGGACGGGAUGAGGCCGGAAUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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