miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22345 5' -55.6 NC_005045.1 + 32118 0.66 0.568153
Target:  5'- uGCCAGGgCUGCCgGGUCCAGc----- -3'
miRNA:   3'- -UGGUUCgGACGGaCUAGGUCcacuag -5'
22345 5' -55.6 NC_005045.1 + 21602 0.66 0.556961
Target:  5'- cGCCuguGCCcGCCUGAUuCCGGcGUcGUCg -3'
miRNA:   3'- -UGGuu-CGGaCGGACUA-GGUC-CAcUAG- -5'
22345 5' -55.6 NC_005045.1 + 29542 0.66 0.545832
Target:  5'- -aCAGGCCgGCCUcuUCCAGGcUGAg- -3'
miRNA:   3'- ugGUUCGGaCGGAcuAGGUCC-ACUag -5'
22345 5' -55.6 NC_005045.1 + 13896 0.7 0.345401
Target:  5'- cACCAGugcugccGCgCUGCC--GUCCGGGUGGUCc -3'
miRNA:   3'- -UGGUU-------CG-GACGGacUAGGUCCACUAG- -5'
22345 5' -55.6 NC_005045.1 + 12264 0.7 0.337738
Target:  5'- gACCGGGCCgUGCUUGGUcgCCAgcucGGUGAUg -3'
miRNA:   3'- -UGGUUCGG-ACGGACUA--GGU----CCACUAg -5'
22345 5' -55.6 NC_005045.1 + 39922 0.71 0.289836
Target:  5'- aACgGAGCUUGCCgGuAUCCGGGUcgaugGAUCg -3'
miRNA:   3'- -UGgUUCGGACGGaC-UAGGUCCA-----CUAG- -5'
22345 5' -55.6 NC_005045.1 + 24534 1.1 0.000441
Target:  5'- gACCAAGCCUGCCUGAUCCAGGUGAUCa -3'
miRNA:   3'- -UGGUUCGGACGGACUAGGUCCACUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.