Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22345 | 5' | -55.6 | NC_005045.1 | + | 32118 | 0.66 | 0.568153 |
Target: 5'- uGCCAGGgCUGCCgGGUCCAGc----- -3' miRNA: 3'- -UGGUUCgGACGGaCUAGGUCcacuag -5' |
|||||||
22345 | 5' | -55.6 | NC_005045.1 | + | 21602 | 0.66 | 0.556961 |
Target: 5'- cGCCuguGCCcGCCUGAUuCCGGcGUcGUCg -3' miRNA: 3'- -UGGuu-CGGaCGGACUA-GGUC-CAcUAG- -5' |
|||||||
22345 | 5' | -55.6 | NC_005045.1 | + | 29542 | 0.66 | 0.545832 |
Target: 5'- -aCAGGCCgGCCUcuUCCAGGcUGAg- -3' miRNA: 3'- ugGUUCGGaCGGAcuAGGUCC-ACUag -5' |
|||||||
22345 | 5' | -55.6 | NC_005045.1 | + | 13896 | 0.7 | 0.345401 |
Target: 5'- cACCAGugcugccGCgCUGCC--GUCCGGGUGGUCc -3' miRNA: 3'- -UGGUU-------CG-GACGGacUAGGUCCACUAG- -5' |
|||||||
22345 | 5' | -55.6 | NC_005045.1 | + | 12264 | 0.7 | 0.337738 |
Target: 5'- gACCGGGCCgUGCUUGGUcgCCAgcucGGUGAUg -3' miRNA: 3'- -UGGUUCGG-ACGGACUA--GGU----CCACUAg -5' |
|||||||
22345 | 5' | -55.6 | NC_005045.1 | + | 39922 | 0.71 | 0.289836 |
Target: 5'- aACgGAGCUUGCCgGuAUCCGGGUcgaugGAUCg -3' miRNA: 3'- -UGgUUCGGACGGaC-UAGGUCCA-----CUAG- -5' |
|||||||
22345 | 5' | -55.6 | NC_005045.1 | + | 24534 | 1.1 | 0.000441 |
Target: 5'- gACCAAGCCUGCCUGAUCCAGGUGAUCa -3' miRNA: 3'- -UGGUUCGGACGGACUAGGUCCACUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home