miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22346 3' -55.5 NC_005045.1 + 24733 0.66 0.634055
Target:  5'- -aCUCCgaGGGCcuGACCCcGAugUCGCCu -3'
miRNA:   3'- agGAGGg-CUCGuuCUGGGaCU--AGUGG- -5'
22346 3' -55.5 NC_005045.1 + 41007 0.66 0.622898
Target:  5'- uUCgUCCaGAGCuaccGGGCCUUGGguaUCGCCc -3'
miRNA:   3'- -AGgAGGgCUCGu---UCUGGGACU---AGUGG- -5'
22346 3' -55.5 NC_005045.1 + 33163 0.66 0.611748
Target:  5'- cCCUCCaCGaAGCGGGACCacaGUC-CCg -3'
miRNA:   3'- aGGAGG-GC-UCGUUCUGGgacUAGuGG- -5'
22346 3' -55.5 NC_005045.1 + 8471 0.67 0.600616
Target:  5'- gCCggCUGAGCGacgAGGCCCUG--CGCCg -3'
miRNA:   3'- aGGagGGCUCGU---UCUGGGACuaGUGG- -5'
22346 3' -55.5 NC_005045.1 + 14478 0.67 0.600616
Target:  5'- aUCaUCCCGAuCAAGcgcACCaaGAUCACCa -3'
miRNA:   3'- -AGgAGGGCUcGUUC---UGGgaCUAGUGG- -5'
22346 3' -55.5 NC_005045.1 + 11811 0.67 0.567424
Target:  5'- gCUaCCUGGagcgcuGCGAGGCCCUGAUCGg- -3'
miRNA:   3'- aGGaGGGCU------CGUUCUGGGACUAGUgg -5'
22346 3' -55.5 NC_005045.1 + 23326 0.67 0.556457
Target:  5'- aCCUgaCCGGGCuGGACCggagccugcugCUGgAUCACCg -3'
miRNA:   3'- aGGAg-GGCUCGuUCUGG-----------GAC-UAGUGG- -5'
22346 3' -55.5 NC_005045.1 + 11742 0.67 0.545552
Target:  5'- gUCCaUCuCCGAgGUGAGcacACCCUGGUC-CCa -3'
miRNA:   3'- -AGG-AG-GGCU-CGUUC---UGGGACUAGuGG- -5'
22346 3' -55.5 NC_005045.1 + 9417 0.68 0.534716
Target:  5'- gCCgaCCgGGGuCAAGGCCCUGuugcugCGCCu -3'
miRNA:   3'- aGGa-GGgCUC-GUUCUGGGACua----GUGG- -5'
22346 3' -55.5 NC_005045.1 + 24619 0.68 0.523958
Target:  5'- gUCCaUCgCG-GCA--GCCUUGAUCACCu -3'
miRNA:   3'- -AGG-AGgGCuCGUucUGGGACUAGUGG- -5'
22346 3' -55.5 NC_005045.1 + 13778 0.68 0.513283
Target:  5'- -aCUCCCG-GCAGGcACCC-GGUCugguCCa -3'
miRNA:   3'- agGAGGGCuCGUUC-UGGGaCUAGu---GG- -5'
22346 3' -55.5 NC_005045.1 + 22772 0.68 0.502698
Target:  5'- gCCUCuCCGAGguGGAugaugcgcuacUCCagggcuUGAUCACCa -3'
miRNA:   3'- aGGAG-GGCUCguUCU-----------GGG------ACUAGUGG- -5'
22346 3' -55.5 NC_005045.1 + 33421 0.68 0.502698
Target:  5'- cCCUCuCCGGGCuGGGCCaggaGGUCgGCCu -3'
miRNA:   3'- aGGAG-GGCUCGuUCUGGga--CUAG-UGG- -5'
22346 3' -55.5 NC_005045.1 + 26751 0.68 0.49221
Target:  5'- -aCUCCCGgcAGCAAGGCCggcaGGUcCGCCg -3'
miRNA:   3'- agGAGGGC--UCGUUCUGGga--CUA-GUGG- -5'
22346 3' -55.5 NC_005045.1 + 42281 0.69 0.471544
Target:  5'- gUCUUCCCuGGCucuGGCCCUGG-CugCu -3'
miRNA:   3'- -AGGAGGGcUCGuu-CUGGGACUaGugG- -5'
22346 3' -55.5 NC_005045.1 + 4526 0.69 0.471544
Target:  5'- gUCCUCgCCGA-CAaggGGACCCaggUGAcacUCACCg -3'
miRNA:   3'- -AGGAG-GGCUcGU---UCUGGG---ACU---AGUGG- -5'
22346 3' -55.5 NC_005045.1 + 218 0.69 0.471544
Target:  5'- gUCUUCCCuGGCucuGGCCCUGG-CugCu -3'
miRNA:   3'- -AGGAGGGcUCGuu-CUGGGACUaGugG- -5'
22346 3' -55.5 NC_005045.1 + 14766 0.7 0.412376
Target:  5'- aUCCUgCUGgguggcGGCGAGGaCCUGAUCAUCa -3'
miRNA:   3'- -AGGAgGGC------UCGUUCUgGGACUAGUGG- -5'
22346 3' -55.5 NC_005045.1 + 36055 0.7 0.393696
Target:  5'- aCCU-CCGAGCAGucccuGACCCUGAcCAUg -3'
miRNA:   3'- aGGAgGGCUCGUU-----CUGGGACUaGUGg -5'
22346 3' -55.5 NC_005045.1 + 8652 0.76 0.180438
Target:  5'- gCCUCCugaugCGGGCAAGACCUcguucauggccugGAUCGCCg -3'
miRNA:   3'- aGGAGG-----GCUCGUUCUGGGa------------CUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.