miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22346 5' -60.8 NC_005045.1 + 23261 0.66 0.372013
Target:  5'- gGCuCCGGUCCA-GCCcGGUcagGUGGGu -3'
miRNA:   3'- -CGcGGCCAGGUcCGGuUCGa--CACCCu -5'
22346 5' -60.8 NC_005045.1 + 12089 0.66 0.330645
Target:  5'- uGCGCuuCGGUac-GGCCAAGCgg-GGGAc -3'
miRNA:   3'- -CGCG--GCCAgguCCGGUUCGacaCCCU- -5'
22346 5' -60.8 NC_005045.1 + 11923 0.67 0.322789
Target:  5'- -gGCCGGaaUCgAGGCCGAGCUGa---- -3'
miRNA:   3'- cgCGGCC--AGgUCCGGUUCGACacccu -5'
22346 5' -60.8 NC_005045.1 + 4939 0.67 0.305251
Target:  5'- gGUGCUGGUCCgcuucagcgacagcGcaccGGCCAAGCUGcUGGa- -3'
miRNA:   3'- -CGCGGCCAGG--------------U----CCGGUUCGAC-ACCcu -5'
22346 5' -60.8 NC_005045.1 + 23387 0.68 0.278591
Target:  5'- gGCGCUGGUCggaaCAGGUUGcGGCUGcUGGGu -3'
miRNA:   3'- -CGCGGCCAG----GUCCGGU-UCGAC-ACCCu -5'
22346 5' -60.8 NC_005045.1 + 34507 0.69 0.239348
Target:  5'- gGCGCUGGU-CAGGCCGcuggcccGCUGUgcaacGGGGc -3'
miRNA:   3'- -CGCGGCCAgGUCCGGUu------CGACA-----CCCU- -5'
22346 5' -60.8 NC_005045.1 + 3028 0.7 0.189247
Target:  5'- uGCuGCUGGUCCAGGgCAGuccGCUGUccGGGc -3'
miRNA:   3'- -CG-CGGCCAGGUCCgGUU---CGACA--CCCu -5'
22346 5' -60.8 NC_005045.1 + 33958 0.71 0.165585
Target:  5'- aGC-CCGGUCCAGGCCAGGgaUGccacGGAa -3'
miRNA:   3'- -CGcGGCCAGGUCCGGUUCg-ACac--CCU- -5'
22346 5' -60.8 NC_005045.1 + 25560 0.72 0.139571
Target:  5'- -aGCCGGUCgaGGGCCGauugguacugucucGGgaGUGGGAc -3'
miRNA:   3'- cgCGGCCAGg-UCCGGU--------------UCgaCACCCU- -5'
22346 5' -60.8 NC_005045.1 + 29539 0.77 0.055685
Target:  5'- -gGCCGGccucuUCCAGGCUGAGCUGccGGGAc -3'
miRNA:   3'- cgCGGCC-----AGGUCCGGUUCGACa-CCCU- -5'
22346 5' -60.8 NC_005045.1 + 25012 1.1 0.000167
Target:  5'- gGCGCCGGUCCAGGCCAAGCUGUGGGAa -3'
miRNA:   3'- -CGCGGCCAGGUCCGGUUCGACACCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.