Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22347 | 3' | -57.4 | NC_005045.1 | + | 18701 | 0.66 | 0.543143 |
Target: 5'- gGCCggaGCGUGAUGCU--GgcGCCgCCGCGa -3' miRNA: 3'- -UGG---CGCACUACGGugCuuUGG-GGCGU- -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 37031 | 0.66 | 0.543143 |
Target: 5'- cACUGCGcGGuUGCCguaguucaGCGAGGCCCUgGCAu -3' miRNA: 3'- -UGGCGCaCU-ACGG--------UGCUUUGGGG-CGU- -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 36213 | 0.66 | 0.543143 |
Target: 5'- gGCCaCGauguUGAgGUCGCGAAugCCCGCc -3' miRNA: 3'- -UGGcGC----ACUaCGGUGCUUugGGGCGu -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 29965 | 0.66 | 0.511152 |
Target: 5'- cCCGCuuccaggGccGCCAUGAuGCCCUGCAu -3' miRNA: 3'- uGGCGca-----CuaCGGUGCUuUGGGGCGU- -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 30318 | 0.67 | 0.47997 |
Target: 5'- uCUGCuUGAgcgcccagGCCACGgcGCCCUGCu -3' miRNA: 3'- uGGCGcACUa-------CGGUGCuuUGGGGCGu -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 16853 | 0.67 | 0.43019 |
Target: 5'- cACCGacgagGUGAucuacauggacUGCCAgGgcGCCCCGCu -3' miRNA: 3'- -UGGCg----CACU-----------ACGGUgCuuUGGGGCGu -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 33947 | 0.67 | 0.43019 |
Target: 5'- gGCCagg-GAUGCCACGGAacacuGCCUCGCu -3' miRNA: 3'- -UGGcgcaCUACGGUGCUU-----UGGGGCGu -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 39361 | 0.67 | 0.43019 |
Target: 5'- aGCCGCccagccacgGGUGCCGuCGAGGCCCUuGCc -3' miRNA: 3'- -UGGCGca-------CUACGGU-GCUUUGGGG-CGu -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 32825 | 0.67 | 0.429226 |
Target: 5'- uCgGCGUGAugaacgcUGCCcuGCGGAACCCUGgGg -3' miRNA: 3'- uGgCGCACU-------ACGG--UGCUUUGGGGCgU- -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 24864 | 0.68 | 0.420601 |
Target: 5'- aACgGCGUcaaGGUG-CugGAGACUCCGCGc -3' miRNA: 3'- -UGgCGCA---CUACgGugCUUUGGGGCGU- -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 34445 | 0.68 | 0.374662 |
Target: 5'- uGCCG-GUGAaGuCCcCGAAgacGCCCCGCAg -3' miRNA: 3'- -UGGCgCACUaC-GGuGCUU---UGGGGCGU- -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 5378 | 0.69 | 0.357261 |
Target: 5'- cGCUGCGcaUGAUGcCCACGAggcacaagAGCgCCGCGc -3' miRNA: 3'- -UGGCGC--ACUAC-GGUGCU--------UUGgGGCGU- -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 34407 | 0.71 | 0.258296 |
Target: 5'- uGCCGCGUGA-GCaccaGCucGGCCCCGUu -3' miRNA: 3'- -UGGCGCACUaCGg---UGcuUUGGGGCGu -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 8465 | 0.71 | 0.245226 |
Target: 5'- aGCUGCGccggcUGA-GCgACGAGGCCCUGCGc -3' miRNA: 3'- -UGGCGC-----ACUaCGgUGCUUUGGGGCGU- -5' |
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22347 | 3' | -57.4 | NC_005045.1 | + | 25153 | 1.08 | 0.000551 |
Target: 5'- cACCGCGUGAUGCCACGAAACCCCGCAc -3' miRNA: 3'- -UGGCGCACUACGGUGCUUUGGGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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