miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22347 3' -57.4 NC_005045.1 + 18701 0.66 0.543143
Target:  5'- gGCCggaGCGUGAUGCU--GgcGCCgCCGCGa -3'
miRNA:   3'- -UGG---CGCACUACGGugCuuUGG-GGCGU- -5'
22347 3' -57.4 NC_005045.1 + 37031 0.66 0.543143
Target:  5'- cACUGCGcGGuUGCCguaguucaGCGAGGCCCUgGCAu -3'
miRNA:   3'- -UGGCGCaCU-ACGG--------UGCUUUGGGG-CGU- -5'
22347 3' -57.4 NC_005045.1 + 36213 0.66 0.543143
Target:  5'- gGCCaCGauguUGAgGUCGCGAAugCCCGCc -3'
miRNA:   3'- -UGGcGC----ACUaCGGUGCUUugGGGCGu -5'
22347 3' -57.4 NC_005045.1 + 29965 0.66 0.511152
Target:  5'- cCCGCuuccaggGccGCCAUGAuGCCCUGCAu -3'
miRNA:   3'- uGGCGca-----CuaCGGUGCUuUGGGGCGU- -5'
22347 3' -57.4 NC_005045.1 + 30318 0.67 0.47997
Target:  5'- uCUGCuUGAgcgcccagGCCACGgcGCCCUGCu -3'
miRNA:   3'- uGGCGcACUa-------CGGUGCuuUGGGGCGu -5'
22347 3' -57.4 NC_005045.1 + 16853 0.67 0.43019
Target:  5'- cACCGacgagGUGAucuacauggacUGCCAgGgcGCCCCGCu -3'
miRNA:   3'- -UGGCg----CACU-----------ACGGUgCuuUGGGGCGu -5'
22347 3' -57.4 NC_005045.1 + 33947 0.67 0.43019
Target:  5'- gGCCagg-GAUGCCACGGAacacuGCCUCGCu -3'
miRNA:   3'- -UGGcgcaCUACGGUGCUU-----UGGGGCGu -5'
22347 3' -57.4 NC_005045.1 + 39361 0.67 0.43019
Target:  5'- aGCCGCccagccacgGGUGCCGuCGAGGCCCUuGCc -3'
miRNA:   3'- -UGGCGca-------CUACGGU-GCUUUGGGG-CGu -5'
22347 3' -57.4 NC_005045.1 + 32825 0.67 0.429226
Target:  5'- uCgGCGUGAugaacgcUGCCcuGCGGAACCCUGgGg -3'
miRNA:   3'- uGgCGCACU-------ACGG--UGCUUUGGGGCgU- -5'
22347 3' -57.4 NC_005045.1 + 24864 0.68 0.420601
Target:  5'- aACgGCGUcaaGGUG-CugGAGACUCCGCGc -3'
miRNA:   3'- -UGgCGCA---CUACgGugCUUUGGGGCGU- -5'
22347 3' -57.4 NC_005045.1 + 34445 0.68 0.374662
Target:  5'- uGCCG-GUGAaGuCCcCGAAgacGCCCCGCAg -3'
miRNA:   3'- -UGGCgCACUaC-GGuGCUU---UGGGGCGU- -5'
22347 3' -57.4 NC_005045.1 + 5378 0.69 0.357261
Target:  5'- cGCUGCGcaUGAUGcCCACGAggcacaagAGCgCCGCGc -3'
miRNA:   3'- -UGGCGC--ACUAC-GGUGCU--------UUGgGGCGU- -5'
22347 3' -57.4 NC_005045.1 + 34407 0.71 0.258296
Target:  5'- uGCCGCGUGA-GCaccaGCucGGCCCCGUu -3'
miRNA:   3'- -UGGCGCACUaCGg---UGcuUUGGGGCGu -5'
22347 3' -57.4 NC_005045.1 + 8465 0.71 0.245226
Target:  5'- aGCUGCGccggcUGA-GCgACGAGGCCCUGCGc -3'
miRNA:   3'- -UGGCGC-----ACUaCGgUGCUUUGGGGCGU- -5'
22347 3' -57.4 NC_005045.1 + 25153 1.08 0.000551
Target:  5'- cACCGCGUGAUGCCACGAAACCCCGCAc -3'
miRNA:   3'- -UGGCGCACUACGGUGCUUUGGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.