miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22348 5' -54.1 NC_005045.1 + 7958 0.68 0.597141
Target:  5'- gCGACCCggcagGuGUccGUGGuaGUGAGGCGUGa -3'
miRNA:   3'- gGCUGGGa----CuCG--UACC--UACUCUGCAU- -5'
22348 5' -54.1 NC_005045.1 + 8800 0.75 0.23339
Target:  5'- gCGGCCCUGGGUaugaccGUGGGUGAGAUu-- -3'
miRNA:   3'- gGCUGGGACUCG------UACCUACUCUGcau -5'
22348 5' -54.1 NC_005045.1 + 25309 1.09 0.001017
Target:  5'- gCCGACCCUGAGCAUGGAUGAGACGUAu -3'
miRNA:   3'- -GGCUGGGACUCGUACCUACUCUGCAU- -5'
22348 5' -54.1 NC_005045.1 + 26864 0.71 0.407108
Target:  5'- aCUGGCCCUGcGCugGGAUGAGGCu-- -3'
miRNA:   3'- -GGCUGGGACuCGuaCCUACUCUGcau -5'
22348 5' -54.1 NC_005045.1 + 33159 0.67 0.664912
Target:  5'- aCGGCCCUGAGCcgcguccUGGcggcguccGAGACGa- -3'
miRNA:   3'- gGCUGGGACUCGu------ACCua------CUCUGCau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.