miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22349 5' -63.6 NC_005045.1 + 11610 0.66 0.249444
Target:  5'- gGCCUGCUGGGuacaccagacCCGGC-CAcGCGucGCAg -3'
miRNA:   3'- gCGGACGGCCC----------GGUCGaGU-CGCu-CGU- -5'
22349 5' -63.6 NC_005045.1 + 32113 0.66 0.249444
Target:  5'- gGgCUGCCGGGuCCAGCauacCAGCc-GCGa -3'
miRNA:   3'- gCgGACGGCCC-GGUCGa---GUCGcuCGU- -5'
22349 5' -63.6 NC_005045.1 + 7269 0.66 0.243213
Target:  5'- gCGCCguaGgCGGGCCGccguuGUUCuguGUGAGCAg -3'
miRNA:   3'- -GCGGa--CgGCCCGGU-----CGAGu--CGCUCGU- -5'
22349 5' -63.6 NC_005045.1 + 17895 0.66 0.225296
Target:  5'- aGCCUccucgGUCaGGGCCAcCUCGGCG-GCGg -3'
miRNA:   3'- gCGGA-----CGG-CCCGGUcGAGUCGCuCGU- -5'
22349 5' -63.6 NC_005045.1 + 28738 0.66 0.249444
Target:  5'- aGCCUGgaUGGagugcGCCuGCUCGGCGAGg- -3'
miRNA:   3'- gCGGACg-GCC-----CGGuCGAGUCGCUCgu -5'
22349 5' -63.6 NC_005045.1 + 33847 0.66 0.23114
Target:  5'- cCGCCc-CUGGGCUGGCccgccgagccaUCAGCGAGgCAg -3'
miRNA:   3'- -GCGGacGGCCCGGUCG-----------AGUCGCUC-GU- -5'
22349 5' -63.6 NC_005045.1 + 11678 0.67 0.20851
Target:  5'- cCGCCguacuUCGGaGCCAGCUCGuCGAGUg -3'
miRNA:   3'- -GCGGac---GGCC-CGGUCGAGUcGCUCGu -5'
22349 5' -63.6 NC_005045.1 + 33129 0.67 0.197928
Target:  5'- aGCCUGCUGGGCCuccgguccgauGCUgacaCGGCccuGAGCc -3'
miRNA:   3'- gCGGACGGCCCGGu----------CGA----GUCG---CUCGu -5'
22349 5' -63.6 NC_005045.1 + 16431 0.67 0.20851
Target:  5'- uGCCUGCCGgcgcuuGGCCAGCUUcGCuucauGCu -3'
miRNA:   3'- gCGGACGGC------CCGGUCGAGuCGcu---CGu -5'
22349 5' -63.6 NC_005045.1 + 33202 0.68 0.173046
Target:  5'- aCGCCaUGCCGGGUUacaccaaGGCUCaggccaAGUGGGCc -3'
miRNA:   3'- -GCGG-ACGGCCCGG-------UCGAG------UCGCUCGu -5'
22349 5' -63.6 NC_005045.1 + 14944 0.68 0.178165
Target:  5'- uGCCUGCgGGacaGCCGGUaCAGCagGGGCGg -3'
miRNA:   3'- gCGGACGgCC---CGGUCGaGUCG--CUCGU- -5'
22349 5' -63.6 NC_005045.1 + 33913 0.68 0.168955
Target:  5'- gGCUcGgCGGGCCAGCcCAG-GGGCGg -3'
miRNA:   3'- gCGGaCgGCCCGGUCGaGUCgCUCGU- -5'
22349 5' -63.6 NC_005045.1 + 34318 0.68 0.160174
Target:  5'- -aCCUGCgCGGGCCAauGCUgAGCG-GCc -3'
miRNA:   3'- gcGGACG-GCCCGGU--CGAgUCGCuCGu -5'
22349 5' -63.6 NC_005045.1 + 35753 0.68 0.178165
Target:  5'- aCGCCUGCCcaGGUcccggacacgCAGUUCAGCcaGGGCAu -3'
miRNA:   3'- -GCGGACGGc-CCG----------GUCGAGUCG--CUCGU- -5'
22349 5' -63.6 NC_005045.1 + 34233 0.69 0.14345
Target:  5'- aCGCCggcaguaUGUCGGGCC-GCUCAGCauuGGCc -3'
miRNA:   3'- -GCGG-------ACGGCCCGGuCGAGUCGc--UCGu -5'
22349 5' -63.6 NC_005045.1 + 28889 0.69 0.15594
Target:  5'- aCGCaacuccaGCCGGGCCAgaguGCUCGGCgcgGAGUg -3'
miRNA:   3'- -GCGga-----CGGCCCGGU----CGAGUCG---CUCGu -5'
22349 5' -63.6 NC_005045.1 + 5234 0.7 0.129038
Target:  5'- uGCCcugGCCGuGuGCCAGC--AGCGGGCAg -3'
miRNA:   3'- gCGGa--CGGC-C-CGGUCGagUCGCUCGU- -5'
22349 5' -63.6 NC_005045.1 + 23483 0.71 0.10075
Target:  5'- aGCCggcggaGCUaccgGGGCCGGCUgAGCGGGUg -3'
miRNA:   3'- gCGGa-----CGG----CCCGGUCGAgUCGCUCGu -5'
22349 5' -63.6 NC_005045.1 + 28710 0.71 0.09531
Target:  5'- gGCCUGCUGGGUCAGaagaguaccaCGGCGGGgCAa -3'
miRNA:   3'- gCGGACGGCCCGGUCga--------GUCGCUC-GU- -5'
22349 5' -63.6 NC_005045.1 + 39163 0.73 0.072045
Target:  5'- gCGCaucugGCCGGGCCGGUUCccgacccuGGaCGAGCAg -3'
miRNA:   3'- -GCGga---CGGCCCGGUCGAG--------UC-GCUCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.