miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22350 3' -56.7 NC_005045.1 + 39015 0.66 0.535888
Target:  5'- -cGGUagCCCUGGagGGCGGCg--GUGAUc -3'
miRNA:   3'- caCCA--GGGGCCa-CCGCCGuaaCAUUG- -5'
22350 3' -56.7 NC_005045.1 + 6481 0.67 0.503729
Target:  5'- cUGGgaCaaGGUGGCGGCGUgugccgGUAGCc -3'
miRNA:   3'- cACCagGggCCACCGCCGUAa-----CAUUG- -5'
22350 3' -56.7 NC_005045.1 + 379 0.67 0.482761
Target:  5'- uGUGGUCCUgucgGGUGGUGGUgcgggaGUGGCu -3'
miRNA:   3'- -CACCAGGGg---CCACCGCCGuaa---CAUUG- -5'
22350 3' -56.7 NC_005045.1 + 42442 0.67 0.482761
Target:  5'- uGUGGUCCUgucgGGUGGUGGUgcgggaGUGGCu -3'
miRNA:   3'- -CACCAGGGg---CCACCGCCGuaa---CAUUG- -5'
22350 3' -56.7 NC_005045.1 + 40389 0.67 0.452128
Target:  5'- -gGGUgccuuugcccgCCUCGGUGGCGGUAUcg-AGCa -3'
miRNA:   3'- caCCA-----------GGGGCCACCGCCGUAacaUUG- -5'
22350 3' -56.7 NC_005045.1 + 28746 0.68 0.413001
Target:  5'- -cGGUCCCCGcUGGUGGCcg-GUcuGAUg -3'
miRNA:   3'- caCCAGGGGCcACCGCCGuaaCA--UUG- -5'
22350 3' -56.7 NC_005045.1 + 24498 0.68 0.403549
Target:  5'- gGUGGUCgaaCUGGUGGCGGag--GUAcaGCa -3'
miRNA:   3'- -CACCAGg--GGCCACCGCCguaaCAU--UG- -5'
22350 3' -56.7 NC_005045.1 + 4725 0.69 0.388716
Target:  5'- gGUGGUUUCggUGGUGGUGGUguugacguuggucauGUUGUAGCu -3'
miRNA:   3'- -CACCAGGG--GCCACCGCCG---------------UAACAUUG- -5'
22350 3' -56.7 NC_005045.1 + 15001 0.77 0.103636
Target:  5'- gGUGG-CCCCGGUGGCGGCu------- -3'
miRNA:   3'- -CACCaGGGGCCACCGCCGuaacauug -5'
22350 3' -56.7 NC_005045.1 + 27205 1.09 0.000443
Target:  5'- cGUGGUCCCCGGUGGCGGCAUUGUAACu -3'
miRNA:   3'- -CACCAGGGGCCACCGCCGUAACAUUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.