Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22351 | 3' | -52.7 | NC_005045.1 | + | 12372 | 0.66 | 0.830835 |
Target: 5'- gCCGggGAacCGgaaucGCUGGUCAuCAUCCCa -3' miRNA: 3'- -GGCuuCU--GCaa---UGGUCGGU-GUAGGGc -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 20079 | 0.66 | 0.830835 |
Target: 5'- aCCGAGGaaguGCGgguCCGGCUGCGggCCGa -3' miRNA: 3'- -GGCUUC----UGCaauGGUCGGUGUagGGC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 15791 | 0.66 | 0.830835 |
Target: 5'- aCGAGGACGagGCCAuCgACAugaUCCUGg -3' miRNA: 3'- gGCUUCUGCaaUGGUcGgUGU---AGGGC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 39652 | 0.66 | 0.802268 |
Target: 5'- gCUGGAGugGUgcCCAGCCuccagcCAUCagcgCCGg -3' miRNA: 3'- -GGCUUCugCAauGGUCGGu-----GUAG----GGC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 4966 | 0.66 | 0.802268 |
Target: 5'- aCCGGccaagcugcuGGACGUgaaGCCAGCgC-CAUCCgCGc -3' miRNA: 3'- -GGCU----------UCUGCAa--UGGUCG-GuGUAGG-GC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 22146 | 0.66 | 0.793357 |
Target: 5'- --uAGGACGauauccauccagcgGCCAGUCGCAUCUCGg -3' miRNA: 3'- ggcUUCUGCaa------------UGGUCGGUGUAGGGC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 3689 | 0.67 | 0.772024 |
Target: 5'- aCGAAGGCGUgGCCGGUgACgAUgCUGu -3' miRNA: 3'- gGCUUCUGCAaUGGUCGgUG-UAgGGC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 21619 | 0.67 | 0.729636 |
Target: 5'- aCCGAGGguuugcgauACGccugUGCCcGCCugAUUCCGg -3' miRNA: 3'- -GGCUUC---------UGCa---AUGGuCGGugUAGGGC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 4458 | 0.68 | 0.719846 |
Target: 5'- aUGAcGACGgcccugccaaggugACCGGuCCGCGUCCCa -3' miRNA: 3'- gGCUuCUGCaa------------UGGUC-GGUGUAGGGc -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 35767 | 0.68 | 0.696729 |
Target: 5'- cCCGGAcACGcaguUCAGCCaggGCAUCCCGu -3' miRNA: 3'- -GGCUUcUGCaau-GGUCGG---UGUAGGGC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 37590 | 0.68 | 0.696729 |
Target: 5'- aCCaGAGGCGgguCCAGCUugAUCuCCa -3' miRNA: 3'- -GGcUUCUGCaauGGUCGGugUAG-GGc -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 13096 | 0.68 | 0.674443 |
Target: 5'- uUGAAuGCGaUACCAGCCGCA-CUCGc -3' miRNA: 3'- gGCUUcUGCaAUGGUCGGUGUaGGGC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 9470 | 0.69 | 0.66323 |
Target: 5'- aCGAGGGCGUcgcccugGCCGGUgGguUCCCu -3' miRNA: 3'- gGCUUCUGCAa------UGGUCGgUguAGGGc -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 6895 | 0.69 | 0.66323 |
Target: 5'- gUCGAAGGCaccgaggGCCAGCaCGCcUCCCu -3' miRNA: 3'- -GGCUUCUGcaa----UGGUCG-GUGuAGGGc -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 35320 | 0.69 | 0.651988 |
Target: 5'- gCCGAcaugugGGGCGUagucACCGGgCAC-UCCCGg -3' miRNA: 3'- -GGCU------UCUGCAa---UGGUCgGUGuAGGGC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 470 | 0.69 | 0.651988 |
Target: 5'- gCUGAgAGGCaagGCUAGCCAC-UCCCGc -3' miRNA: 3'- -GGCU-UCUGcaaUGGUCGGUGuAGGGC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 17272 | 0.7 | 0.606934 |
Target: 5'- gUCGucGAUGUUguaCAGCCGCAUCUCu -3' miRNA: 3'- -GGCuuCUGCAAug-GUCGGUGUAGGGc -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 13256 | 0.7 | 0.562238 |
Target: 5'- gCUGAAGGCGccUGCCGGCauCugGUCCuCGg -3' miRNA: 3'- -GGCUUCUGCa-AUGGUCG--GugUAGG-GC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 23363 | 0.71 | 0.507743 |
Target: 5'- gCCGguGGCGgUGCCuGCCGCAggucaaCCCGu -3' miRNA: 3'- -GGCuuCUGCaAUGGuCGGUGUa-----GGGC- -5' |
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22351 | 3' | -52.7 | NC_005045.1 | + | 33147 | 0.71 | 0.507743 |
Target: 5'- uCCGAugcuGACacgGCCcugAGCCGCGUCCUGg -3' miRNA: 3'- -GGCUu---CUGcaaUGG---UCGGUGUAGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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