miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22351 3' -52.7 NC_005045.1 + 12372 0.66 0.830835
Target:  5'- gCCGggGAacCGgaaucGCUGGUCAuCAUCCCa -3'
miRNA:   3'- -GGCuuCU--GCaa---UGGUCGGU-GUAGGGc -5'
22351 3' -52.7 NC_005045.1 + 20079 0.66 0.830835
Target:  5'- aCCGAGGaaguGCGgguCCGGCUGCGggCCGa -3'
miRNA:   3'- -GGCUUC----UGCaauGGUCGGUGUagGGC- -5'
22351 3' -52.7 NC_005045.1 + 15791 0.66 0.830835
Target:  5'- aCGAGGACGagGCCAuCgACAugaUCCUGg -3'
miRNA:   3'- gGCUUCUGCaaUGGUcGgUGU---AGGGC- -5'
22351 3' -52.7 NC_005045.1 + 39652 0.66 0.802268
Target:  5'- gCUGGAGugGUgcCCAGCCuccagcCAUCagcgCCGg -3'
miRNA:   3'- -GGCUUCugCAauGGUCGGu-----GUAG----GGC- -5'
22351 3' -52.7 NC_005045.1 + 4966 0.66 0.802268
Target:  5'- aCCGGccaagcugcuGGACGUgaaGCCAGCgC-CAUCCgCGc -3'
miRNA:   3'- -GGCU----------UCUGCAa--UGGUCG-GuGUAGG-GC- -5'
22351 3' -52.7 NC_005045.1 + 22146 0.66 0.793357
Target:  5'- --uAGGACGauauccauccagcgGCCAGUCGCAUCUCGg -3'
miRNA:   3'- ggcUUCUGCaa------------UGGUCGGUGUAGGGC- -5'
22351 3' -52.7 NC_005045.1 + 3689 0.67 0.772024
Target:  5'- aCGAAGGCGUgGCCGGUgACgAUgCUGu -3'
miRNA:   3'- gGCUUCUGCAaUGGUCGgUG-UAgGGC- -5'
22351 3' -52.7 NC_005045.1 + 21619 0.67 0.729636
Target:  5'- aCCGAGGguuugcgauACGccugUGCCcGCCugAUUCCGg -3'
miRNA:   3'- -GGCUUC---------UGCa---AUGGuCGGugUAGGGC- -5'
22351 3' -52.7 NC_005045.1 + 4458 0.68 0.719846
Target:  5'- aUGAcGACGgcccugccaaggugACCGGuCCGCGUCCCa -3'
miRNA:   3'- gGCUuCUGCaa------------UGGUC-GGUGUAGGGc -5'
22351 3' -52.7 NC_005045.1 + 35767 0.68 0.696729
Target:  5'- cCCGGAcACGcaguUCAGCCaggGCAUCCCGu -3'
miRNA:   3'- -GGCUUcUGCaau-GGUCGG---UGUAGGGC- -5'
22351 3' -52.7 NC_005045.1 + 37590 0.68 0.696729
Target:  5'- aCCaGAGGCGgguCCAGCUugAUCuCCa -3'
miRNA:   3'- -GGcUUCUGCaauGGUCGGugUAG-GGc -5'
22351 3' -52.7 NC_005045.1 + 13096 0.68 0.674443
Target:  5'- uUGAAuGCGaUACCAGCCGCA-CUCGc -3'
miRNA:   3'- gGCUUcUGCaAUGGUCGGUGUaGGGC- -5'
22351 3' -52.7 NC_005045.1 + 9470 0.69 0.66323
Target:  5'- aCGAGGGCGUcgcccugGCCGGUgGguUCCCu -3'
miRNA:   3'- gGCUUCUGCAa------UGGUCGgUguAGGGc -5'
22351 3' -52.7 NC_005045.1 + 6895 0.69 0.66323
Target:  5'- gUCGAAGGCaccgaggGCCAGCaCGCcUCCCu -3'
miRNA:   3'- -GGCUUCUGcaa----UGGUCG-GUGuAGGGc -5'
22351 3' -52.7 NC_005045.1 + 35320 0.69 0.651988
Target:  5'- gCCGAcaugugGGGCGUagucACCGGgCAC-UCCCGg -3'
miRNA:   3'- -GGCU------UCUGCAa---UGGUCgGUGuAGGGC- -5'
22351 3' -52.7 NC_005045.1 + 470 0.69 0.651988
Target:  5'- gCUGAgAGGCaagGCUAGCCAC-UCCCGc -3'
miRNA:   3'- -GGCU-UCUGcaaUGGUCGGUGuAGGGC- -5'
22351 3' -52.7 NC_005045.1 + 17272 0.7 0.606934
Target:  5'- gUCGucGAUGUUguaCAGCCGCAUCUCu -3'
miRNA:   3'- -GGCuuCUGCAAug-GUCGGUGUAGGGc -5'
22351 3' -52.7 NC_005045.1 + 13256 0.7 0.562238
Target:  5'- gCUGAAGGCGccUGCCGGCauCugGUCCuCGg -3'
miRNA:   3'- -GGCUUCUGCa-AUGGUCG--GugUAGG-GC- -5'
22351 3' -52.7 NC_005045.1 + 23363 0.71 0.507743
Target:  5'- gCCGguGGCGgUGCCuGCCGCAggucaaCCCGu -3'
miRNA:   3'- -GGCuuCUGCaAUGGuCGGUGUa-----GGGC- -5'
22351 3' -52.7 NC_005045.1 + 33147 0.71 0.507743
Target:  5'- uCCGAugcuGACacgGCCcugAGCCGCGUCCUGg -3'
miRNA:   3'- -GGCUu---CUGcaaUGG---UCGGUGUAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.