miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22351 5' -59.4 NC_005045.1 + 26701 0.66 0.454534
Target:  5'- uGCCGGGaGUCGGUgccccugguguggGGGUGCAgUUCAuGGa -3'
miRNA:   3'- -CGGCCC-CGGCCGa------------CUCAUGU-AGGU-CC- -5'
22351 5' -59.4 NC_005045.1 + 20098 0.66 0.429605
Target:  5'- gGCUGcGGGCCgaGGCUgucGAGUACGUCa--- -3'
miRNA:   3'- -CGGC-CCCGG--CCGA---CUCAUGUAGgucc -5'
22351 5' -59.4 NC_005045.1 + 23531 0.66 0.429605
Target:  5'- gGCCGGcGG-CGGC-GGG-ACuUCCAGGu -3'
miRNA:   3'- -CGGCC-CCgGCCGaCUCaUGuAGGUCC- -5'
22351 5' -59.4 NC_005045.1 + 4214 0.67 0.392877
Target:  5'- gGCCGGGGCCuacugaccgGGCUGAa-GCGUCa--- -3'
miRNA:   3'- -CGGCCCCGG---------CCGACUcaUGUAGgucc -5'
22351 5' -59.4 NC_005045.1 + 15689 0.67 0.392877
Target:  5'- gGCUGGGcGgCGacaccGCUGAcaACAUCCGGGg -3'
miRNA:   3'- -CGGCCC-CgGC-----CGACUcaUGUAGGUCC- -5'
22351 5' -59.4 NC_005045.1 + 18642 0.68 0.341756
Target:  5'- cGCCGGaGGCCaGg-GAGUuCcUCCAGGa -3'
miRNA:   3'- -CGGCC-CCGGcCgaCUCAuGuAGGUCC- -5'
22351 5' -59.4 NC_005045.1 + 36945 0.68 0.325818
Target:  5'- uGCCGGuGCCGGCgaacauGUuCGUCCAGc -3'
miRNA:   3'- -CGGCCcCGGCCGacu---CAuGUAGGUCc -5'
22351 5' -59.4 NC_005045.1 + 23263 0.69 0.302958
Target:  5'- uUCGGGGUCGGCgcg--GCAgCCGGGg -3'
miRNA:   3'- cGGCCCCGGCCGacucaUGUaGGUCC- -5'
22351 5' -59.4 NC_005045.1 + 28899 0.69 0.294891
Target:  5'- aGCCGGGccagaguGCuCGGCgcgGAGUGCGcgacUCCgAGGu -3'
miRNA:   3'- -CGGCCC-------CG-GCCGa--CUCAUGU----AGG-UCC- -5'
22351 5' -59.4 NC_005045.1 + 13218 0.69 0.281353
Target:  5'- -aUGGGGCCGGaUGgcaacuggcgccAGUACcgCCGGGg -3'
miRNA:   3'- cgGCCCCGGCCgAC------------UCAUGuaGGUCC- -5'
22351 5' -59.4 NC_005045.1 + 8585 0.73 0.153225
Target:  5'- uGCCGGGGCUGGUgcugccgGcGUACAUgaagggccuccacgCCGGGg -3'
miRNA:   3'- -CGGCCCCGGCCGa------CuCAUGUA--------------GGUCC- -5'
22351 5' -59.4 NC_005045.1 + 28550 0.78 0.07091
Target:  5'- gGCCGGGGCguuCGGCgucaaGGGUGCAUCCGu- -3'
miRNA:   3'- -CGGCCCCG---GCCGa----CUCAUGUAGGUcc -5'
22351 5' -59.4 NC_005045.1 + 23470 0.78 0.068924
Target:  5'- aCCGGGGCCGGCUGAGcgggugcuUGCGgaacaaCGGGu -3'
miRNA:   3'- cGGCCCCGGCCGACUC--------AUGUag----GUCC- -5'
22351 5' -59.4 NC_005045.1 + 27429 1.11 0.000235
Target:  5'- uGCCGGGGCCGGCUGAGUACAUCCAGGc -3'
miRNA:   3'- -CGGCCCCGGCCGACUCAUGUAGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.