Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22351 | 5' | -59.4 | NC_005045.1 | + | 26701 | 0.66 | 0.454534 |
Target: 5'- uGCCGGGaGUCGGUgccccugguguggGGGUGCAgUUCAuGGa -3' miRNA: 3'- -CGGCCC-CGGCCGa------------CUCAUGU-AGGU-CC- -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 20098 | 0.66 | 0.429605 |
Target: 5'- gGCUGcGGGCCgaGGCUgucGAGUACGUCa--- -3' miRNA: 3'- -CGGC-CCCGG--CCGA---CUCAUGUAGgucc -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 23531 | 0.66 | 0.429605 |
Target: 5'- gGCCGGcGG-CGGC-GGG-ACuUCCAGGu -3' miRNA: 3'- -CGGCC-CCgGCCGaCUCaUGuAGGUCC- -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 4214 | 0.67 | 0.392877 |
Target: 5'- gGCCGGGGCCuacugaccgGGCUGAa-GCGUCa--- -3' miRNA: 3'- -CGGCCCCGG---------CCGACUcaUGUAGgucc -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 15689 | 0.67 | 0.392877 |
Target: 5'- gGCUGGGcGgCGacaccGCUGAcaACAUCCGGGg -3' miRNA: 3'- -CGGCCC-CgGC-----CGACUcaUGUAGGUCC- -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 18642 | 0.68 | 0.341756 |
Target: 5'- cGCCGGaGGCCaGg-GAGUuCcUCCAGGa -3' miRNA: 3'- -CGGCC-CCGGcCgaCUCAuGuAGGUCC- -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 36945 | 0.68 | 0.325818 |
Target: 5'- uGCCGGuGCCGGCgaacauGUuCGUCCAGc -3' miRNA: 3'- -CGGCCcCGGCCGacu---CAuGUAGGUCc -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 23263 | 0.69 | 0.302958 |
Target: 5'- uUCGGGGUCGGCgcg--GCAgCCGGGg -3' miRNA: 3'- cGGCCCCGGCCGacucaUGUaGGUCC- -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 28899 | 0.69 | 0.294891 |
Target: 5'- aGCCGGGccagaguGCuCGGCgcgGAGUGCGcgacUCCgAGGu -3' miRNA: 3'- -CGGCCC-------CG-GCCGa--CUCAUGU----AGG-UCC- -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 13218 | 0.69 | 0.281353 |
Target: 5'- -aUGGGGCCGGaUGgcaacuggcgccAGUACcgCCGGGg -3' miRNA: 3'- cgGCCCCGGCCgAC------------UCAUGuaGGUCC- -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 8585 | 0.73 | 0.153225 |
Target: 5'- uGCCGGGGCUGGUgcugccgGcGUACAUgaagggccuccacgCCGGGg -3' miRNA: 3'- -CGGCCCCGGCCGa------CuCAUGUA--------------GGUCC- -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 28550 | 0.78 | 0.07091 |
Target: 5'- gGCCGGGGCguuCGGCgucaaGGGUGCAUCCGu- -3' miRNA: 3'- -CGGCCCCG---GCCGa----CUCAUGUAGGUcc -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 23470 | 0.78 | 0.068924 |
Target: 5'- aCCGGGGCCGGCUGAGcgggugcuUGCGgaacaaCGGGu -3' miRNA: 3'- cGGCCCCGGCCGACUC--------AUGUag----GUCC- -5' |
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22351 | 5' | -59.4 | NC_005045.1 | + | 27429 | 1.11 | 0.000235 |
Target: 5'- uGCCGGGGCCGGCUGAGUACAUCCAGGc -3' miRNA: 3'- -CGGCCCCGGCCGACUCAUGUAGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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