Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22352 | 3' | -54.8 | NC_005045.1 | + | 20258 | 0.66 | 0.635432 |
Target: 5'- gUGGcuGCUGuCCAGGCcauGCAcgaagUUGGGAg -3' miRNA: 3'- -ACCu-CGACuGGUUCGu--CGU-----AACCCUg -5' |
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22352 | 3' | -54.8 | NC_005045.1 | + | 18654 | 0.66 | 0.6228 |
Target: 5'- gGGAGUUccuccagGACCccucGGCGGCAaugaccUGGGGCg -3' miRNA: 3'- aCCUCGA-------CUGGu---UCGUCGUa-----ACCCUG- -5' |
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22352 | 3' | -54.8 | NC_005045.1 | + | 28498 | 0.66 | 0.601015 |
Target: 5'- aGGuGgaGGCCAAGC-GCcagGGGAUg -3' miRNA: 3'- aCCuCgaCUGGUUCGuCGuaaCCCUG- -5' |
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22352 | 3' | -54.8 | NC_005045.1 | + | 4394 | 0.67 | 0.533216 |
Target: 5'- cUGGuGaucGGCguAGCAGC-UUGGGACa -3' miRNA: 3'- -ACCuCga-CUGguUCGUCGuAACCCUG- -5' |
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22352 | 3' | -54.8 | NC_005045.1 | + | 26164 | 0.68 | 0.500314 |
Target: 5'- aGGGGCUGACCcauCAGCA--GGcGACc -3' miRNA: 3'- aCCUCGACUGGuucGUCGUaaCC-CUG- -5' |
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22352 | 3' | -54.8 | NC_005045.1 | + | 22974 | 0.68 | 0.489544 |
Target: 5'- -cGAGCUGagcaaucgggGCCAAGcCAGCAaugacUUGGGAa -3' miRNA: 3'- acCUCGAC----------UGGUUC-GUCGU-----AACCCUg -5' |
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22352 | 3' | -54.8 | NC_005045.1 | + | 38795 | 0.7 | 0.398146 |
Target: 5'- cGGccAGUUGAUCAcgaAGCugaucauGCAUUGGGACc -3' miRNA: 3'- aCC--UCGACUGGU---UCGu------CGUAACCCUG- -5' |
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22352 | 3' | -54.8 | NC_005045.1 | + | 41041 | 0.7 | 0.398146 |
Target: 5'- aGGGGgaGAUCAAGCGGCAgacggcccgUGcGGAg -3' miRNA: 3'- aCCUCgaCUGGUUCGUCGUa--------AC-CCUg -5' |
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22352 | 3' | -54.8 | NC_005045.1 | + | 23540 | 0.74 | 0.225464 |
Target: 5'- gGGAGUgaaGGCC-GGCGGCGgcGGGACu -3' miRNA: 3'- aCCUCGa--CUGGuUCGUCGUaaCCCUG- -5' |
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22352 | 3' | -54.8 | NC_005045.1 | + | 34356 | 0.76 | 0.147822 |
Target: 5'- aGGAGCUGACgGGGCaacugcggGGCGUcuucgGGGACu -3' miRNA: 3'- aCCUCGACUGgUUCG--------UCGUAa----CCCUG- -5' |
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22352 | 3' | -54.8 | NC_005045.1 | + | 27749 | 1.09 | 0.000637 |
Target: 5'- cUGGAGCUGACCAAGCAGCAUUGGGACc -3' miRNA: 3'- -ACCUCGACUGGUUCGUCGUAACCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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