miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22352 3' -54.8 NC_005045.1 + 20258 0.66 0.635432
Target:  5'- gUGGcuGCUGuCCAGGCcauGCAcgaagUUGGGAg -3'
miRNA:   3'- -ACCu-CGACuGGUUCGu--CGU-----AACCCUg -5'
22352 3' -54.8 NC_005045.1 + 18654 0.66 0.6228
Target:  5'- gGGAGUUccuccagGACCccucGGCGGCAaugaccUGGGGCg -3'
miRNA:   3'- aCCUCGA-------CUGGu---UCGUCGUa-----ACCCUG- -5'
22352 3' -54.8 NC_005045.1 + 28498 0.66 0.601015
Target:  5'- aGGuGgaGGCCAAGC-GCcagGGGAUg -3'
miRNA:   3'- aCCuCgaCUGGUUCGuCGuaaCCCUG- -5'
22352 3' -54.8 NC_005045.1 + 4394 0.67 0.533216
Target:  5'- cUGGuGaucGGCguAGCAGC-UUGGGACa -3'
miRNA:   3'- -ACCuCga-CUGguUCGUCGuAACCCUG- -5'
22352 3' -54.8 NC_005045.1 + 26164 0.68 0.500314
Target:  5'- aGGGGCUGACCcauCAGCA--GGcGACc -3'
miRNA:   3'- aCCUCGACUGGuucGUCGUaaCC-CUG- -5'
22352 3' -54.8 NC_005045.1 + 22974 0.68 0.489544
Target:  5'- -cGAGCUGagcaaucgggGCCAAGcCAGCAaugacUUGGGAa -3'
miRNA:   3'- acCUCGAC----------UGGUUC-GUCGU-----AACCCUg -5'
22352 3' -54.8 NC_005045.1 + 38795 0.7 0.398146
Target:  5'- cGGccAGUUGAUCAcgaAGCugaucauGCAUUGGGACc -3'
miRNA:   3'- aCC--UCGACUGGU---UCGu------CGUAACCCUG- -5'
22352 3' -54.8 NC_005045.1 + 41041 0.7 0.398146
Target:  5'- aGGGGgaGAUCAAGCGGCAgacggcccgUGcGGAg -3'
miRNA:   3'- aCCUCgaCUGGUUCGUCGUa--------AC-CCUg -5'
22352 3' -54.8 NC_005045.1 + 23540 0.74 0.225464
Target:  5'- gGGAGUgaaGGCC-GGCGGCGgcGGGACu -3'
miRNA:   3'- aCCUCGa--CUGGuUCGUCGUaaCCCUG- -5'
22352 3' -54.8 NC_005045.1 + 34356 0.76 0.147822
Target:  5'- aGGAGCUGACgGGGCaacugcggGGCGUcuucgGGGACu -3'
miRNA:   3'- aCCUCGACUGgUUCG--------UCGUAa----CCCUG- -5'
22352 3' -54.8 NC_005045.1 + 27749 1.09 0.000637
Target:  5'- cUGGAGCUGACCAAGCAGCAUUGGGACc -3'
miRNA:   3'- -ACCUCGACUGGUUCGUCGUAACCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.