miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22353 3' -58.1 NC_005045.1 + 28425 1.1 0.000309
Target:  5'- gGCGCCGCUGCCCGCGAUAUCGCCAACc -3'
miRNA:   3'- -CGCGGCGACGGGCGCUAUAGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 40520 0.68 0.365478
Target:  5'- cGCGgCGCaGCCCugGCGGcUGcccUCGCCGGCc -3'
miRNA:   3'- -CGCgGCGaCGGG--CGCU-AU---AGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 35467 0.68 0.374212
Target:  5'- gGCGCCGCagggGCaCUGCcuu-UCGUCAACg -3'
miRNA:   3'- -CGCGGCGa---CG-GGCGcuauAGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 23160 0.68 0.374212
Target:  5'- cUGCCGCcggGCCuCGCuaaccugGUUGCCAACa -3'
miRNA:   3'- cGCGGCGa--CGG-GCGcua----UAGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 8703 0.67 0.438196
Target:  5'- uGCGCCGCaGCUCaaGCGGUAcuUCgacccagGCCGGCc -3'
miRNA:   3'- -CGCGGCGaCGGG--CGCUAU--AG-------CGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 34248 0.67 0.439169
Target:  5'- cGgGCCGCUcagcauugGCCCGCGcagGUAU-GCCGGg -3'
miRNA:   3'- -CgCGGCGA--------CGGGCGC---UAUAgCGGUUg -5'
22353 3' -58.1 NC_005045.1 + 28510 0.66 0.457884
Target:  5'- aGCGCCaggggauGCUaGCCgGCGGaagCGCCGAg -3'
miRNA:   3'- -CGCGG-------CGA-CGGgCGCUauaGCGGUUg -5'
22353 3' -58.1 NC_005045.1 + 34590 0.66 0.489303
Target:  5'- uGCGCCGCaaCCCG-GAccUCGCUGAUg -3'
miRNA:   3'- -CGCGGCGacGGGCgCUauAGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 4434 0.66 0.493431
Target:  5'- cCGCaguGCUGCCCGUGGuUAUCcaugacgacggcccuGCCAAg -3'
miRNA:   3'- cGCGg--CGACGGGCGCU-AUAG---------------CGGUUg -5'
22353 3' -58.1 NC_005045.1 + 14924 0.68 0.365478
Target:  5'- cGUGCCGCaGgUgGCGAaUGUCGCCGc- -3'
miRNA:   3'- -CGCGGCGaCgGgCGCU-AUAGCGGUug -5'
22353 3' -58.1 NC_005045.1 + 5574 0.68 0.348437
Target:  5'- uGCGCCGCgugGCCaagaGCcGGgcauUCGCCcACg -3'
miRNA:   3'- -CGCGGCGa--CGGg---CG-CUau--AGCGGuUG- -5'
22353 3' -58.1 NC_005045.1 + 35963 0.69 0.340131
Target:  5'- uGCGCCG-UGCCC-UGGgcuUCGCCGAg -3'
miRNA:   3'- -CGCGGCgACGGGcGCUau-AGCGGUUg -5'
22353 3' -58.1 NC_005045.1 + 35439 0.77 0.088526
Target:  5'- cGCaGCCGCcaCCgGCGAUAUCGUCAGCg -3'
miRNA:   3'- -CG-CGGCGacGGgCGCUAUAGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 41737 0.77 0.097558
Target:  5'- uCGCCGCUGCaacucagaaagaccuCCGCGccuUCGCCGGCa -3'
miRNA:   3'- cGCGGCGACG---------------GGCGCuauAGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 28164 0.76 0.114033
Target:  5'- gGUGCCGCUGCCgGCacgggucGAUAUgGCCAc- -3'
miRNA:   3'- -CGCGGCGACGGgCG-------CUAUAgCGGUug -5'
22353 3' -58.1 NC_005045.1 + 11820 0.72 0.202314
Target:  5'- aGCGCUGCgagGCCCugaucgguuucucgGCGAUGgagugUGCCGGCc -3'
miRNA:   3'- -CGCGGCGa--CGGG--------------CGCUAUa----GCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 10395 0.71 0.220868
Target:  5'- aGCGCCGCgccaugGUCCGCagccucaugGAagAUUGCCGGCg -3'
miRNA:   3'- -CGCGGCGa-----CGGGCG---------CUa-UAGCGGUUG- -5'
22353 3' -58.1 NC_005045.1 + 39107 0.7 0.26503
Target:  5'- aCGCCGCaGuCCCGCGA-AUCGaucuaCAACg -3'
miRNA:   3'- cGCGGCGaC-GGGCGCUaUAGCg----GUUG- -5'
22353 3' -58.1 NC_005045.1 + 3767 0.7 0.271893
Target:  5'- -aGCCGCacaguucgcggUGCCCGcCGGUAUUGUCcGCa -3'
miRNA:   3'- cgCGGCG-----------ACGGGC-GCUAUAGCGGuUG- -5'
22353 3' -58.1 NC_005045.1 + 40369 0.69 0.300775
Target:  5'- uCGCCGUUuacucGCCCuaCGAgAUCGCCAGCc -3'
miRNA:   3'- cGCGGCGA-----CGGGc-GCUaUAGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.