Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22353 | 3' | -58.1 | NC_005045.1 | + | 31735 | 0.66 | 0.489303 |
Target: 5'- gGC-CCGCUGCCaCGUuccguucuccGAUcUCGCCAc- -3' miRNA: 3'- -CGcGGCGACGG-GCG----------CUAuAGCGGUug -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 33999 | 0.66 | 0.479054 |
Target: 5'- cGCGcCCGCUGCacaauggccugUGCGAUGguaucggCGUCAGCc -3' miRNA: 3'- -CGC-GGCGACGg----------GCGCUAUa------GCGGUUG- -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 34248 | 0.67 | 0.439169 |
Target: 5'- cGgGCCGCUcagcauugGCCCGCGcagGUAU-GCCGGg -3' miRNA: 3'- -CgCGGCGA--------CGGGCGC---UAUAgCGGUUg -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 34574 | 0.67 | 0.439169 |
Target: 5'- aCGCC-CUGCCgGUGGgccaucGUgGCCAGCu -3' miRNA: 3'- cGCGGcGACGGgCGCUa-----UAgCGGUUG- -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 34590 | 0.66 | 0.489303 |
Target: 5'- uGCGCCGCaaCCCG-GAccUCGCUGAUg -3' miRNA: 3'- -CGCGGCGacGGGCgCUauAGCGGUUG- -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 35439 | 0.77 | 0.088526 |
Target: 5'- cGCaGCCGCcaCCgGCGAUAUCGUCAGCg -3' miRNA: 3'- -CG-CGGCGacGGgCGCUAUAGCGGUUG- -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 35467 | 0.68 | 0.374212 |
Target: 5'- gGCGCCGCagggGCaCUGCcuu-UCGUCAACg -3' miRNA: 3'- -CGCGGCGa---CG-GGCGcuauAGCGGUUG- -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 35514 | 0.74 | 0.143069 |
Target: 5'- gGCGCCGCUGa---CGAUAUCGCCggUg -3' miRNA: 3'- -CGCGGCGACgggcGCUAUAGCGGuuG- -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 35963 | 0.69 | 0.340131 |
Target: 5'- uGCGCCG-UGCCC-UGGgcuUCGCCGAg -3' miRNA: 3'- -CGCGGCgACGGGcGCUau-AGCGGUUg -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 36946 | 0.69 | 0.316083 |
Target: 5'- uUGCCGgUGCCgGCGAacauguUCGuCCAGCc -3' miRNA: 3'- cGCGGCgACGGgCGCUau----AGC-GGUUG- -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 39107 | 0.7 | 0.26503 |
Target: 5'- aCGCCGCaGuCCCGCGA-AUCGaucuaCAACg -3' miRNA: 3'- cGCGGCGaC-GGGCGCUaUAGCg----GUUG- -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 40369 | 0.69 | 0.300775 |
Target: 5'- uCGCCGUUuacucGCCCuaCGAgAUCGCCAGCc -3' miRNA: 3'- cGCGGCGA-----CGGGc-GCUaUAGCGGUUG- -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 40520 | 0.68 | 0.365478 |
Target: 5'- cGCGgCGCaGCCCugGCGGcUGcccUCGCCGGCc -3' miRNA: 3'- -CGCgGCGaCGGG--CGCU-AU---AGCGGUUG- -5' |
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22353 | 3' | -58.1 | NC_005045.1 | + | 41737 | 0.77 | 0.097558 |
Target: 5'- uCGCCGCUGCaacucagaaagaccuCCGCGccuUCGCCGGCa -3' miRNA: 3'- cGCGGCGACG---------------GGCGCuauAGCGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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