miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22353 5' -54.9 NC_005045.1 + 26799 0.69 0.436312
Target:  5'- uCCGCUAaCcGCCGCugggcaGAGCGGGCCGc- -3'
miRNA:   3'- -GGCGAUcGaUGGCG------UUCGUUCGGCac -5'
22353 5' -54.9 NC_005045.1 + 4685 0.69 0.440297
Target:  5'- aCCGCU-GCUACCcCGGGCGccaagcugaucaagaAGCCGg- -3'
miRNA:   3'- -GGCGAuCGAUGGcGUUCGU---------------UCGGCac -5'
22353 5' -54.9 NC_005045.1 + 2067 0.69 0.487533
Target:  5'- gCCGCcaaGGCUcGCCGCGacaaGGCAcGCCGg- -3'
miRNA:   3'- -GGCGa--UCGA-UGGCGU----UCGUuCGGCac -5'
22353 5' -54.9 NC_005045.1 + 25707 0.66 0.631023
Target:  5'- cUCGUgAGUguaUACCGCGAGCGcAGCCugGUGc -3'
miRNA:   3'- -GGCGaUCG---AUGGCGUUCGU-UCGG--CAC- -5'
22353 5' -54.9 NC_005045.1 + 39201 0.67 0.608417
Target:  5'- -aGgaAGCcACgCGCGGGUAGGCCGUu -3'
miRNA:   3'- ggCgaUCGaUG-GCGUUCGUUCGGCAc -5'
22353 5' -54.9 NC_005045.1 + 41571 0.67 0.574694
Target:  5'- gCCGCccagggcagUGGCUGCUGCGAuCAcAGCgGUGg -3'
miRNA:   3'- -GGCG---------AUCGAUGGCGUUcGU-UCGgCAC- -5'
22353 5' -54.9 NC_005045.1 + 33711 0.67 0.552445
Target:  5'- aCGCggacGCUACCGUAGGCAGuCCa-- -3'
miRNA:   3'- gGCGau--CGAUGGCGUUCGUUcGGcac -5'
22353 5' -54.9 NC_005045.1 + 14967 0.68 0.540317
Target:  5'- aCGCUGGgaGCCGUcugAGGCAcugccugcgggacAGCCGg- -3'
miRNA:   3'- gGCGAUCgaUGGCG---UUCGU-------------UCGGCac -5'
22353 5' -54.9 NC_005045.1 + 15241 0.69 0.466687
Target:  5'- uCCGCgUAGUgGCCGCAgccacguaGGCgGGGCCGUc -3'
miRNA:   3'- -GGCG-AUCGaUGGCGU--------UCG-UUCGGCAc -5'
22353 5' -54.9 NC_005045.1 + 34506 0.69 0.446312
Target:  5'- gCGCUGGUcagGCCGCuGGCccGCUGUGc -3'
miRNA:   3'- gGCGAUCGa--UGGCGuUCGuuCGGCAC- -5'
22353 5' -54.9 NC_005045.1 + 7275 0.72 0.319124
Target:  5'- aUGCgGGC-GCCGUAGGCGGGCCGc- -3'
miRNA:   3'- gGCGaUCGaUGGCGUUCGUUCGGCac -5'
22353 5' -54.9 NC_005045.1 + 40076 0.78 0.133852
Target:  5'- uCCGCUGGgUACUGCuGGCAGGacaCGUGg -3'
miRNA:   3'- -GGCGAUCgAUGGCGuUCGUUCg--GCAC- -5'
22353 5' -54.9 NC_005045.1 + 16986 0.66 0.650245
Target:  5'- uCCGCUucguccagcAGCUugUGCAGggccaccagcagguGCAGGUCGUc -3'
miRNA:   3'- -GGCGA---------UCGAugGCGUU--------------CGUUCGGCAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.