miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22353 5' -54.9 NC_005045.1 + 2067 0.69 0.487533
Target:  5'- gCCGCcaaGGCUcGCCGCGacaaGGCAcGCCGg- -3'
miRNA:   3'- -GGCGa--UCGA-UGGCGU----UCGUuCGGCac -5'
22353 5' -54.9 NC_005045.1 + 3091 0.66 0.619715
Target:  5'- aCGCUGaaUACCGCAA--AGGCUGUGc -3'
miRNA:   3'- gGCGAUcgAUGGCGUUcgUUCGGCAC- -5'
22353 5' -54.9 NC_005045.1 + 3488 0.77 0.158704
Target:  5'- aCGCUGGCU-UCGCAAGCAucGCCGa- -3'
miRNA:   3'- gGCGAUCGAuGGCGUUCGUu-CGGCac -5'
22353 5' -54.9 NC_005045.1 + 4685 0.69 0.440297
Target:  5'- aCCGCU-GCUACCcCGGGCGccaagcugaucaagaAGCCGg- -3'
miRNA:   3'- -GGCGAuCGAUGGcGUUCGU---------------UCGGCac -5'
22353 5' -54.9 NC_005045.1 + 5447 0.67 0.608417
Target:  5'- cCUGCUG---ACCGCAGGUuuGGCCGUc -3'
miRNA:   3'- -GGCGAUcgaUGGCGUUCGu-UCGGCAc -5'
22353 5' -54.9 NC_005045.1 + 7047 0.66 0.664912
Target:  5'- aCCGCgaGGCgaacugGCCaGCAGGaGAGCCGg- -3'
miRNA:   3'- -GGCGa-UCGa-----UGG-CGUUCgUUCGGCac -5'
22353 5' -54.9 NC_005045.1 + 7275 0.72 0.319124
Target:  5'- aUGCgGGC-GCCGUAGGCGGGCCGc- -3'
miRNA:   3'- gGCGaUCGaUGGCGUUCGUUCGGCac -5'
22353 5' -54.9 NC_005045.1 + 10584 0.74 0.221142
Target:  5'- uUGCUGGCUGCUaCAAGCGcaAGCCGg- -3'
miRNA:   3'- gGCGAUCGAUGGcGUUCGU--UCGGCac -5'
22353 5' -54.9 NC_005045.1 + 10671 0.67 0.590391
Target:  5'- gCCGCgucgugGGCUACCGUgugGAGCuGGaagaugguuccggcaCCGUGg -3'
miRNA:   3'- -GGCGa-----UCGAUGGCG---UUCGuUC---------------GGCAC- -5'
22353 5' -54.9 NC_005045.1 + 14877 0.68 0.519591
Target:  5'- cCUGCUguaccGGCUGucCCGCAGGCAGuGCCu-- -3'
miRNA:   3'- -GGCGA-----UCGAU--GGCGUUCGUU-CGGcac -5'
22353 5' -54.9 NC_005045.1 + 14967 0.68 0.540317
Target:  5'- aCGCUGGgaGCCGUcugAGGCAcugccugcgggacAGCCGg- -3'
miRNA:   3'- gGCGAUCgaUGGCG---UUCGU-------------UCGGCac -5'
22353 5' -54.9 NC_005045.1 + 15241 0.69 0.466687
Target:  5'- uCCGCgUAGUgGCCGCAgccacguaGGCgGGGCCGUc -3'
miRNA:   3'- -GGCG-AUCGaUGGCGU--------UCG-UUCGGCAc -5'
22353 5' -54.9 NC_005045.1 + 15375 0.79 0.103236
Target:  5'- cCUGCUGGa-ACCGCugcGGCGGGCCGUGg -3'
miRNA:   3'- -GGCGAUCgaUGGCGu--UCGUUCGGCAC- -5'
22353 5' -54.9 NC_005045.1 + 15846 0.7 0.426443
Target:  5'- cCCGCUGGCggagGCCG-AGGU--GCUGUGg -3'
miRNA:   3'- -GGCGAUCGa---UGGCgUUCGuuCGGCAC- -5'
22353 5' -54.9 NC_005045.1 + 16367 0.66 0.653633
Target:  5'- -aGCUGGCcaagcGCCgGCAGGCA-GCCGc- -3'
miRNA:   3'- ggCGAUCGa----UGG-CGUUCGUuCGGCac -5'
22353 5' -54.9 NC_005045.1 + 16986 0.66 0.650245
Target:  5'- uCCGCUucguccagcAGCUugUGCAGggccaccagcagguGCAGGUCGUc -3'
miRNA:   3'- -GGCGA---------UCGAugGCGUU--------------CGUUCGGCAc -5'
22353 5' -54.9 NC_005045.1 + 17406 0.68 0.541417
Target:  5'- aCUGCggcGGCUGCgGCG-GCugGAGUCGUGg -3'
miRNA:   3'- -GGCGa--UCGAUGgCGUuCG--UUCGGCAC- -5'
22353 5' -54.9 NC_005045.1 + 23391 0.67 0.562428
Target:  5'- cCCGUU-GUU-CCGCAAGCAcccgcucAGCCGg- -3'
miRNA:   3'- -GGCGAuCGAuGGCGUUCGU-------UCGGCac -5'
22353 5' -54.9 NC_005045.1 + 25001 0.66 0.619715
Target:  5'- aCCGCccaagUGGC-GCCGgucCAGGcCAAGCUGUGg -3'
miRNA:   3'- -GGCG-----AUCGaUGGC---GUUC-GUUCGGCAC- -5'
22353 5' -54.9 NC_005045.1 + 25707 0.66 0.631023
Target:  5'- cUCGUgAGUguaUACCGCGAGCGcAGCCugGUGc -3'
miRNA:   3'- -GGCGaUCG---AUGGCGUUCGU-UCGG--CAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.