Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22354 | 3' | -56.2 | NC_005045.1 | + | 11817 | 0.66 | 0.621381 |
Target: 5'- uGGagcgCuGCGAGGCCCUGAUCg------ -3' miRNA: 3'- -CCa---GcCGCUCCGGGACUAGgucuaac -5' |
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22354 | 3' | -56.2 | NC_005045.1 | + | 39233 | 0.66 | 0.610272 |
Target: 5'- gGGUCGG-GAaccGGCCCgg--CCAGAUg- -3' miRNA: 3'- -CCAGCCgCU---CCGGGacuaGGUCUAac -5' |
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22354 | 3' | -56.2 | NC_005045.1 | + | 34693 | 0.66 | 0.596969 |
Target: 5'- cGUUGGCGAGGUucaggccgagaacggUCUGcaucucaucagcgagGUCCGGGUUGc -3' miRNA: 3'- cCAGCCGCUCCG---------------GGAC---------------UAGGUCUAAC- -5' |
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22354 | 3' | -56.2 | NC_005045.1 | + | 14777 | 0.66 | 0.588123 |
Target: 5'- uGG-CGGCGAGGaCCUGAUCa------ -3' miRNA: 3'- -CCaGCCGCUCCgGGACUAGgucuaac -5' |
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22354 | 3' | -56.2 | NC_005045.1 | + | 30880 | 0.67 | 0.544343 |
Target: 5'- --aCGGUGuGGCCCUGGaCCgcacgcGGGUUGa -3' miRNA: 3'- ccaGCCGCuCCGGGACUaGG------UCUAAC- -5' |
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22354 | 3' | -56.2 | NC_005045.1 | + | 27603 | 0.67 | 0.533553 |
Target: 5'- --cUGGCGAcaaccugauGGUUCUGAUCCAGAa-- -3' miRNA: 3'- ccaGCCGCU---------CCGGGACUAGGUCUaac -5' |
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22354 | 3' | -56.2 | NC_005045.1 | + | 33753 | 0.67 | 0.530331 |
Target: 5'- cGGUCGGCcaGGGCCUUGAuggucggcggcaggUUCGGGUc- -3' miRNA: 3'- -CCAGCCGc-UCCGGGACU--------------AGGUCUAac -5' |
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22354 | 3' | -56.2 | NC_005045.1 | + | 39464 | 0.69 | 0.411757 |
Target: 5'- cGUCGGCGAGGCUgguGUCCAGcaUGu -3' miRNA: 3'- cCAGCCGCUCCGGgacUAGGUCuaAC- -5' |
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22354 | 3' | -56.2 | NC_005045.1 | + | 18673 | 0.69 | 0.390417 |
Target: 5'- -cUCGGCGGcaaugaccuggggcGGCCCUGG-CCGGAgcgUGa -3' miRNA: 3'- ccAGCCGCU--------------CCGGGACUaGGUCUa--AC- -5' |
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22354 | 3' | -56.2 | NC_005045.1 | + | 28717 | 0.74 | 0.214796 |
Target: 5'- -cUCGGCGAGGUuccacaUCUGAuugUCCAGGUUGu -3' miRNA: 3'- ccAGCCGCUCCG------GGACU---AGGUCUAAC- -5' |
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22354 | 3' | -56.2 | NC_005045.1 | + | 28612 | 1.11 | 0.000436 |
Target: 5'- aGGUCGGCGAGGCCCUGAUCCAGAUUGa -3' miRNA: 3'- -CCAGCCGCUCCGGGACUAGGUCUAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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