Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
22355 | 3' | -56.6 | NC_005045.1 | + | 25750 | 0.66 | 0.59858 |
Target: 5'- cCGUCcgcugaacacccaGGcCAaGCGUAGCUUCAGCCGg -3' miRNA: 3'- uGCAG-------------CCuGUcUGCGUUGAGGUCGGC- -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 17496 | 0.66 | 0.599683 |
Target: 5'- gUGUUGcGAguGuauCGCccacGACUCCAGCCGc -3' miRNA: 3'- uGCAGC-CUguCu--GCG----UUGAGGUCGGC- -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 20553 | 0.66 | 0.577689 |
Target: 5'- gGCcUUGGACGGAUGCAcuuGCUCCuauGUgGg -3' miRNA: 3'- -UGcAGCCUGUCUGCGU---UGAGGu--CGgC- -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 32241 | 0.66 | 0.577689 |
Target: 5'- cACGUCGGcCcc-UGCGGCaUCCAGCCc -3' miRNA: 3'- -UGCAGCCuGucuGCGUUG-AGGUCGGc -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 21029 | 0.66 | 0.576594 |
Target: 5'- aAUGaUCGGACAGAguugcugguauucCGCGAUggCCAGuuGg -3' miRNA: 3'- -UGC-AGCCUGUCU-------------GCGUUGa-GGUCggC- -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 18773 | 0.67 | 0.523638 |
Target: 5'- -gGUCGcGGCGGcgccaGCAucacGCUCCGGCCa -3' miRNA: 3'- ugCAGC-CUGUCug---CGU----UGAGGUCGGc -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 26535 | 0.67 | 0.534311 |
Target: 5'- -aGUUGGGCAGAgUGU-ACUCCGGCg- -3' miRNA: 3'- ugCAGCCUGUCU-GCGuUGAGGUCGgc -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 38102 | 0.68 | 0.461545 |
Target: 5'- uCGUCGGuACGGGCaaaGUGAC-CCGGCCu -3' miRNA: 3'- uGCAGCC-UGUCUG---CGUUGaGGUCGGc -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 28917 | 0.68 | 0.481835 |
Target: 5'- gGCG-CGGAguG-CGCGACUCCgaGGUCa -3' miRNA: 3'- -UGCaGCCUguCuGCGUUGAGG--UCGGc -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 14844 | 0.68 | 0.455546 |
Target: 5'- aACGUCGcGGCGGaugcugGCGCGACUgccgccccugcuguaCCGGCUGu -3' miRNA: 3'- -UGCAGC-CUGUC------UGCGUUGA---------------GGUCGGC- -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 8863 | 0.68 | 0.45157 |
Target: 5'- uACGcCGaGAaaauCGGugGCGACUCCgAGCUGa -3' miRNA: 3'- -UGCaGC-CU----GUCugCGUUGAGG-UCGGC- -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 7095 | 0.69 | 0.376341 |
Target: 5'- uCG-CGGugGGugGU-GCUCCAGCCc -3' miRNA: 3'- uGCaGCCugUCugCGuUGAGGUCGGc -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 33233 | 0.71 | 0.317031 |
Target: 5'- --cUCGGACgccgccaGGACGCGGCUCagGGCCGu -3' miRNA: 3'- ugcAGCCUG-------UCUGCGUUGAGg-UCGGC- -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 9698 | 0.72 | 0.253007 |
Target: 5'- uGCGUCGG-CGuacuCGguACUCCAGCCa -3' miRNA: 3'- -UGCAGCCuGUcu--GCguUGAGGUCGGc -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 31788 | 0.74 | 0.209882 |
Target: 5'- uCGUCGGACGcuggggcGAUGC-GCUCCAGCuCGa -3' miRNA: 3'- uGCAGCCUGU-------CUGCGuUGAGGUCG-GC- -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 18819 | 0.76 | 0.147662 |
Target: 5'- aGCGggcaCGG-CAGGCGCAGCUCC-GCCa -3' miRNA: 3'- -UGCa---GCCuGUCUGCGUUGAGGuCGGc -5' |
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22355 | 3' | -56.6 | NC_005045.1 | + | 28877 | 1.09 | 0.000557 |
Target: 5'- aACGUCGGACAGACGCAACUCCAGCCGg -3' miRNA: 3'- -UGCAGCCUGUCUGCGUUGAGGUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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