miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22355 5' -60.8 NC_005045.1 + 17971 0.66 0.389677
Target:  5'- -gCGGCGCGGuauucGCGCcacuCUCCGAu -3'
miRNA:   3'- gaGCCGCGCCuca--CGCGcu--GAGGCUc -5'
22355 5' -60.8 NC_005045.1 + 23267 0.67 0.323606
Target:  5'- -aUGGUuCGGGGUcgGCGCGGCagCCGGGg -3'
miRNA:   3'- gaGCCGcGCCUCA--CGCGCUGa-GGCUC- -5'
22355 5' -60.8 NC_005045.1 + 11950 0.69 0.22885
Target:  5'- gCUUGGCGUGGuucaccuUG-GCGACUUCGAGg -3'
miRNA:   3'- -GAGCCGCGCCuc-----ACgCGCUGAGGCUC- -5'
22355 5' -60.8 NC_005045.1 + 11844 0.73 0.13497
Target:  5'- uCUCGGCGaUGGAGUGUGCcGGC-CUGAa -3'
miRNA:   3'- -GAGCCGC-GCCUCACGCG-CUGaGGCUc -5'
22355 5' -60.8 NC_005045.1 + 28913 1.09 0.000251
Target:  5'- gCUCGGCGCGGAGUGCGCGACUCCGAGg -3'
miRNA:   3'- -GAGCCGCGCCUCACGCGCUGAGGCUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.