Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22357 | 3' | -55.6 | NC_005045.1 | + | 18594 | 0.67 | 0.517648 |
Target: 5'- cCAAcCGCuucaCAGGGCGg---GGCGGCa -3' miRNA: 3'- -GUU-GCGuac-GUCCCGUaguaCCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 26043 | 0.67 | 0.506873 |
Target: 5'- gCGAUGC-UGguGGcGCAgcacCGUGGCGaGCu -3' miRNA: 3'- -GUUGCGuACguCC-CGUa---GUACCGC-CG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 36029 | 0.68 | 0.485621 |
Target: 5'- uCGGCGaagccCAGGGCAcggcgcagcgccUCAuUGGCGGCg -3' miRNA: 3'- -GUUGCguac-GUCCCGU------------AGU-ACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 4536 | 0.69 | 0.438451 |
Target: 5'- gGACGCGgaccggucaccuugGCAGGGCcgucGUCAUGGauaaccacgGGCa -3' miRNA: 3'- gUUGCGUa-------------CGUCCCG----UAGUACCg--------CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 884 | 0.69 | 0.434474 |
Target: 5'- gAGCGCccugGCgAGGGUAUUgacacgugGGCGGCa -3' miRNA: 3'- gUUGCGua--CG-UCCCGUAGua------CCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 20918 | 0.69 | 0.41394 |
Target: 5'- uUAGCGCAacuccacUGCGauGGCGUCucGGCGGCg -3' miRNA: 3'- -GUUGCGU-------ACGUc-CCGUAGuaCCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 20285 | 0.69 | 0.405324 |
Target: 5'- -uGCGCAgGcCAGGGCGgUCAgucccaGGUGGCu -3' miRNA: 3'- guUGCGUaC-GUCCCGU-AGUa-----CCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 36293 | 0.69 | 0.405324 |
Target: 5'- aCGACuaAUGCGuGGCAUUaucgcagguGUGGUGGCg -3' miRNA: 3'- -GUUGcgUACGUcCCGUAG---------UACCGCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 34364 | 0.69 | 0.386589 |
Target: 5'- aCGGgGCAacUGCGGGGCGUCuucgGGgacuucacCGGCa -3' miRNA: 3'- -GUUgCGU--ACGUCCCGUAGua--CC--------GCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 39193 | 0.69 | 0.386589 |
Target: 5'- gGACGa--GCAGGcGCGUUAUGGCgacuGGCu -3' miRNA: 3'- gUUGCguaCGUCC-CGUAGUACCG----CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 30236 | 0.7 | 0.342316 |
Target: 5'- gGAgGCcgaGCAGGGCGcCGUGGCcugGGCg -3' miRNA: 3'- gUUgCGua-CGUCCCGUaGUACCG---CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 32420 | 0.7 | 0.341469 |
Target: 5'- --cCGCGUGCGGcGGCcuccucggcgGUCAUGGCuacuucuGGCa -3' miRNA: 3'- guuGCGUACGUC-CCG----------UAGUACCG-------CCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 5456 | 0.72 | 0.258228 |
Target: 5'- gCGGCGCucuuGUGCcucguGGGCAUCAUGcGCaGCg -3' miRNA: 3'- -GUUGCG----UACGu----CCCGUAGUAC-CGcCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 29356 | 0.77 | 0.118571 |
Target: 5'- cCAGCGCcUGUAGGGCAUCGuUGG-GGUu -3' miRNA: 3'- -GUUGCGuACGUCCCGUAGU-ACCgCCG- -5' |
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22357 | 3' | -55.6 | NC_005045.1 | + | 29886 | 1.1 | 0.000439 |
Target: 5'- cCAACGCAUGCAGGGCAUCAUGGCGGCc -3' miRNA: 3'- -GUUGCGUACGUCCCGUAGUACCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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