Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22358 | 3' | -57.7 | NC_005045.1 | + | 45 | 0.66 | 0.508431 |
Target: 5'- gGUGgGCCACUGccuagccuccugggaGcuUCCggcuucGCCGgGUGGCg -3' miRNA: 3'- -CGCgCGGUGAC---------------U--AGGa-----UGGCgCACCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 372 | 0.69 | 0.344581 |
Target: 5'- gGUG-GUCugUGGUCCUGUCGgGUGGUg -3' miRNA: 3'- -CGCgCGGugACUAGGAUGGCgCACCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 626 | 0.73 | 0.196756 |
Target: 5'- uGUGCuGCCGCUGGUCCUGCUGUcuuGCc -3' miRNA: 3'- -CGCG-CGGUGACUAGGAUGGCGcacCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 739 | 0.66 | 0.532621 |
Target: 5'- -aGUGCCACgcgGGuuucagggugguggUCCUgGCUGgGUGGCu -3' miRNA: 3'- cgCGCGGUGa--CU--------------AGGA-UGGCgCACCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 3025 | 0.67 | 0.434145 |
Target: 5'- aCGUGCUGCUGGUCCagggcaguCCGCuguccgGGCa -3' miRNA: 3'- cGCGCGGUGACUAGGau------GGCGca----CCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 7754 | 0.66 | 0.514699 |
Target: 5'- aGCGCGCCca--AUCCagcCCGCGUcGGUa -3' miRNA: 3'- -CGCGCGGugacUAGGau-GGCGCA-CCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 8261 | 0.68 | 0.415162 |
Target: 5'- uGCGCGa-ACUGAUCaaGCUGCGaGGUg -3' miRNA: 3'- -CGCGCggUGACUAGgaUGGCGCaCCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 9071 | 0.72 | 0.236625 |
Target: 5'- gGUGCGgUuCUGGUCCUugCGC-UGGCc -3' miRNA: 3'- -CGCGCgGuGACUAGGAugGCGcACCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 10666 | 0.68 | 0.415162 |
Target: 5'- cGUGgGCCGCgucgUGGg-CUACCGUGUGGa -3' miRNA: 3'- -CGCgCGGUG----ACUagGAUGGCGCACCg -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 13237 | 0.67 | 0.451652 |
Target: 5'- gGCGCcaguaccGCCGggGAUUCUggcaagcGCCGgGUGGCa -3' miRNA: 3'- -CGCG-------CGGUgaCUAGGA-------UGGCgCACCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 14754 | 0.69 | 0.336388 |
Target: 5'- uCG-GCC-CUGcacAUCCUGCUGgGUGGCg -3' miRNA: 3'- cGCgCGGuGAC---UAGGAUGGCgCACCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 14909 | 0.66 | 0.535808 |
Target: 5'- uCGCGCCAgc-AUCC-GCCGCGacguugGGCa -3' miRNA: 3'- cGCGCGGUgacUAGGaUGGCGCa-----CCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 14978 | 0.69 | 0.361394 |
Target: 5'- aGCGUGCuCcCUGA-CgUGCCGCagGUGGCc -3' miRNA: 3'- -CGCGCG-GuGACUaGgAUGGCG--CACCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 16635 | 0.7 | 0.29757 |
Target: 5'- gGCGCGCUgcacugGCUGggCCgcaagGCCGCugagGUGGUc -3' miRNA: 3'- -CGCGCGG------UGACuaGGa----UGGCG----CACCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 16884 | 0.68 | 0.415162 |
Target: 5'- gGCGCcCCGCUGGacgaccugcaCCUGCUG-GUGGCc -3' miRNA: 3'- -CGCGcGGUGACUa---------GGAUGGCgCACCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 22661 | 0.72 | 0.236624 |
Target: 5'- aGCGCGUCACUGccgaggaaGUCCgcaucACUGCGgaagaGGCa -3' miRNA: 3'- -CGCGCGGUGAC--------UAGGa----UGGCGCa----CCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 24274 | 0.73 | 0.20207 |
Target: 5'- uCGCaCCGCUGAugaacaUCCgcgACCuGCGUGGCu -3' miRNA: 3'- cGCGcGGUGACU------AGGa--UGG-CGCACCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 26416 | 0.67 | 0.479631 |
Target: 5'- -gGCGUCACguaagugGCCGUGUGGCu -3' miRNA: 3'- cgCGCGGUGacuaggaUGGCGCACCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 27333 | 0.7 | 0.328338 |
Target: 5'- -gGUGCCGCccugguaucgaGGUCgUACUGCGUGGUg -3' miRNA: 3'- cgCGCGGUGa----------CUAGgAUGGCGCACCG- -5' |
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22358 | 3' | -57.7 | NC_005045.1 | + | 30687 | 1.14 | 0.000191 |
Target: 5'- aGCGCGCCACUGAUCCUACCGCGUGGCa -3' miRNA: 3'- -CGCGCGGUGACUAGGAUGGCGCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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