miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22358 5' -50.3 NC_005045.1 + 27726 0.66 0.900325
Target:  5'- aCGGGCuggcaGGCUGUUCaGGugCAuACGGCc -3'
miRNA:   3'- -GCUUG-----UCGAUAAGcCCugGU-UGCUGu -5'
22358 5' -50.3 NC_005045.1 + 15232 0.66 0.900325
Target:  5'- uGGccGCAGCcacgUAggCGGGGCCGuCGGCGu -3'
miRNA:   3'- gCU--UGUCG----AUaaGCCCUGGUuGCUGU- -5'
22358 5' -50.3 NC_005045.1 + 14349 0.66 0.900325
Target:  5'- cCGGGCGGCUuugCGGGuuACCGGCcuGCGg -3'
miRNA:   3'- -GCUUGUCGAuaaGCCC--UGGUUGc-UGU- -5'
22358 5' -50.3 NC_005045.1 + 691 0.66 0.89295
Target:  5'- -aGACAGCa-----GGACCAGCGGCAg -3'
miRNA:   3'- gcUUGUCGauaagcCCUGGUUGCUGU- -5'
22358 5' -50.3 NC_005045.1 + 29972 0.66 0.885283
Target:  5'- gGAGCAGUgggacaagAUgcaGGcGGCCAACGGCu -3'
miRNA:   3'- gCUUGUCGa-------UAag-CC-CUGGUUGCUGu -5'
22358 5' -50.3 NC_005045.1 + 15287 0.66 0.885283
Target:  5'- -cGGCAGCagg-UGGGGCCAaggcguaccGCGACAc -3'
miRNA:   3'- gcUUGUCGauaaGCCCUGGU---------UGCUGU- -5'
22358 5' -50.3 NC_005045.1 + 33620 0.67 0.869097
Target:  5'- gGAGCuGCUGcgcCGGGACCgggaGugGACu -3'
miRNA:   3'- gCUUGuCGAUaa-GCCCUGG----UugCUGu -5'
22358 5' -50.3 NC_005045.1 + 6171 0.67 0.869097
Target:  5'- cCGAcagACGGCcucggUCGGGGCCAcCGuCAg -3'
miRNA:   3'- -GCU---UGUCGaua--AGCCCUGGUuGCuGU- -5'
22358 5' -50.3 NC_005045.1 + 12735 0.67 0.833535
Target:  5'- gGAGCuGCUggagGUUCGGGcgGCUgGACGACAg -3'
miRNA:   3'- gCUUGuCGA----UAAGCCC--UGG-UUGCUGU- -5'
22358 5' -50.3 NC_005045.1 + 33634 0.67 0.833535
Target:  5'- gCGGACagccauAGCUcgUCGGGAguUCAGCGcACGu -3'
miRNA:   3'- -GCUUG------UCGAuaAGCCCU--GGUUGC-UGU- -5'
22358 5' -50.3 NC_005045.1 + 15063 0.68 0.824034
Target:  5'- gGAGCcGCcac-CGGGGCCAccuGCGGCAc -3'
miRNA:   3'- gCUUGuCGauaaGCCCUGGU---UGCUGU- -5'
22358 5' -50.3 NC_005045.1 + 30777 0.69 0.773423
Target:  5'- cCGAAUAGCUGUUCGGcGguaguGCCAcGCGGu- -3'
miRNA:   3'- -GCUUGUCGAUAAGCC-C-----UGGU-UGCUgu -5'
22358 5' -50.3 NC_005045.1 + 32345 0.69 0.741022
Target:  5'- --uGCGGUUGcgUUGGGGCCucuGCGGCAa -3'
miRNA:   3'- gcuUGUCGAUa-AGCCCUGGu--UGCUGU- -5'
22358 5' -50.3 NC_005045.1 + 15090 0.72 0.592482
Target:  5'- gGGACAGC----CGGGACUucGACGGCAg -3'
miRNA:   3'- gCUUGUCGauaaGCCCUGG--UUGCUGU- -5'
22358 5' -50.3 NC_005045.1 + 30721 1.09 0.002352
Target:  5'- cCGAACAGCUAUUCGGGACCAACGACAc -3'
miRNA:   3'- -GCUUGUCGAUAAGCCCUGGUUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.