Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22360 | 3' | -57.7 | NC_005045.1 | + | 28705 | 0.66 | 0.505069 |
Target: 5'- aGGccGGCCUGCUGGgucagaagaguaccACGgcGGGGCAa- -3' miRNA: 3'- aCCauCUGGACGACC--------------UGC--UCCCGUgg -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 39179 | 0.66 | 0.497773 |
Target: 5'- cGGUucccGACC--CUGGACGAGcaGGCGCg -3' miRNA: 3'- aCCAu---CUGGacGACCUGCUC--CCGUGg -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 14127 | 0.66 | 0.477198 |
Target: 5'- cGGcAGcCUUGUUGGccaggGCGAGGGCGgCu -3' miRNA: 3'- aCCaUCuGGACGACC-----UGCUCCCGUgG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 39015 | 0.67 | 0.467068 |
Target: 5'- cGGUAGcCCUGgaGGGCGGcGGUgauCCc -3' miRNA: 3'- aCCAUCuGGACgaCCUGCUcCCGu--GG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 11696 | 0.67 | 0.457051 |
Target: 5'- aUGGaccaGGACCUGCUGaGCGAGuaccuguccGGC-CCg -3' miRNA: 3'- -ACCa---UCUGGACGACcUGCUC---------CCGuGG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 31306 | 0.67 | 0.43737 |
Target: 5'- cGGUAuGGCCUuccagaUGGGCGAaGGGCguGCCc -3' miRNA: 3'- aCCAU-CUGGAcg----ACCUGCU-CCCG--UGG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 6023 | 0.67 | 0.427713 |
Target: 5'- aGGgcuuGACCcgGCUGGugGAgguaggucaacGGGCcgGCCu -3' miRNA: 3'- aCCau--CUGGa-CGACCugCU-----------CCCG--UGG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 16911 | 0.67 | 0.427713 |
Target: 5'- cUGGUGGcCCugcacaagcUGCUGGACGaAGcGGaCAUCa -3' miRNA: 3'- -ACCAUCuGG---------ACGACCUGC-UC-CC-GUGG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 33086 | 0.68 | 0.399519 |
Target: 5'- cGGUGGGCCggGaCUGuggucccgcuucGugGAGGGUAUCc -3' miRNA: 3'- aCCAUCUGGa-C-GAC------------CugCUCCCGUGG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 16882 | 0.68 | 0.390389 |
Target: 5'- aGGgcGcCCcGCUGGACGAccuGCACCu -3' miRNA: 3'- aCCauCuGGaCGACCUGCUcc-CGUGG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 41152 | 0.68 | 0.372542 |
Target: 5'- aGGUGGACCgUGCccUGGAccagaaccgccCGuGGGCugACCg -3' miRNA: 3'- aCCAUCUGG-ACG--ACCU-----------GCuCCCG--UGG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 42330 | 0.68 | 0.367297 |
Target: 5'- gGGaAGACCguagGCUGG-CGcugguagcccaccgcAGGGCGCUg -3' miRNA: 3'- aCCaUCUGGa---CGACCuGC---------------UCCCGUGG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 267 | 0.68 | 0.367297 |
Target: 5'- gGGaAGACCguagGCUGG-CGcugguagcccaccgcAGGGCGCUg -3' miRNA: 3'- aCCaUCUGGa---CGACCuGC---------------UCCCGUGG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 40604 | 0.69 | 0.355258 |
Target: 5'- aGGgcGACaagGCcGG-CGAGGGCAgCCg -3' miRNA: 3'- aCCauCUGga-CGaCCuGCUCCCGU-GG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 32508 | 0.7 | 0.299304 |
Target: 5'- cGGUAucucGGCCUGCUccACGcGGGCGCUa -3' miRNA: 3'- aCCAU----CUGGACGAccUGCuCCCGUGG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 7077 | 0.71 | 0.263675 |
Target: 5'- ---cGGACgUGCUGcacAUGAGGGCACCc -3' miRNA: 3'- accaUCUGgACGACc--UGCUCCCGUGG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 15391 | 0.71 | 0.235856 |
Target: 5'- cGGcGGGCCgugGC-GGACGuguacgagcgaggcGGGGCGCCg -3' miRNA: 3'- aCCaUCUGGa--CGaCCUGC--------------UCCCGUGG- -5' |
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22360 | 3' | -57.7 | NC_005045.1 | + | 32395 | 1.12 | 0.000233 |
Target: 5'- gUGGUAGACCUGCUGGACGAGGGCACCg -3' miRNA: 3'- -ACCAUCUGGACGACCUGCUCCCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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