miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22360 5' -62.2 NC_005045.1 + 6166 0.66 0.259667
Target:  5'- --cGCGCUUcCGUGGcgaaGGCugAGGCCGAGg -3'
miRNA:   3'- aauCGCGGGcGCACC----UCG--UCCGGCUC- -5'
22360 5' -62.2 NC_005045.1 + 28785 0.66 0.257698
Target:  5'- --uGC-CCCGcCGUGGuacucuucugacccAGCAGGCCGGc -3'
miRNA:   3'- aauCGcGGGC-GCACC--------------UCGUCCGGCUc -5'
22360 5' -62.2 NC_005045.1 + 30368 0.66 0.266319
Target:  5'- gUUGGCGCUgaacuCGCGcaGGGCcuGGGCCGGGg -3'
miRNA:   3'- -AAUCGCGG-----GCGCacCUCG--UCCGGCUC- -5'
22360 5' -62.2 NC_005045.1 + 11539 0.67 0.246139
Target:  5'- -cGGUGgCCGgGUcuGGuguacccAGCAGGCCGAGu -3'
miRNA:   3'- aaUCGCgGGCgCA--CC-------UCGUCCGGCUC- -5'
22360 5' -62.2 NC_005045.1 + 10681 0.67 0.24677
Target:  5'- -gGGCuaCCGUGUGGAGCuGGaaGAu -3'
miRNA:   3'- aaUCGcgGGCGCACCUCGuCCggCUc -5'
22360 5' -62.2 NC_005045.1 + 32643 0.68 0.205772
Target:  5'- --cGCGuUCCGUGUGGuGCAGGgCGGc -3'
miRNA:   3'- aauCGC-GGGCGCACCuCGUCCgGCUc -5'
22360 5' -62.2 NC_005045.1 + 32230 0.69 0.161834
Target:  5'- cUUGGCGCUgGCGUGGGuGCucuGCUGGGg -3'
miRNA:   3'- -AAUCGCGGgCGCACCU-CGuc-CGGCUC- -5'
22360 5' -62.2 NC_005045.1 + 29059 0.69 0.175453
Target:  5'- --cGUGCCCGUaUGGccGGCgAGGCUGAGg -3'
miRNA:   3'- aauCGCGGGCGcACC--UCG-UCCGGCUC- -5'
22360 5' -62.2 NC_005045.1 + 22112 0.69 0.175453
Target:  5'- -cGGCGCaCCGCGUaGGAGCGGaGCg--- -3'
miRNA:   3'- aaUCGCG-GGCGCA-CCUCGUC-CGgcuc -5'
22360 5' -62.2 NC_005045.1 + 4127 0.75 0.059052
Target:  5'- -aGGCGCCUGCc---AGCAGGCCGAGg -3'
miRNA:   3'- aaUCGCGGGCGcaccUCGUCCGGCUC- -5'
22360 5' -62.2 NC_005045.1 + 32434 1.06 0.000202
Target:  5'- aUUAGCGCCCGCGUGGAGCAGGCCGAGa -3'
miRNA:   3'- -AAUCGCGGGCGCACCUCGUCCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.