miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22361 3' -54.9 NC_005045.1 + 32540 1.12 0.000585
Target:  5'- uGGAUCACCUCAAGACCCACGCCGAGGu -3'
miRNA:   3'- -CCUAGUGGAGUUCUGGGUGCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 30016 0.76 0.197826
Target:  5'- cGGAUCGCCUCGugcAGgguacgcagcucgGCCUGCGCCuGGGGa -3'
miRNA:   3'- -CCUAGUGGAGU---UC-------------UGGGUGCGG-CUCC- -5'
22361 3' -54.9 NC_005045.1 + 12205 0.75 0.244587
Target:  5'- cGGUCACUUCGuggaucgGGACCCGCaCUGAGGu -3'
miRNA:   3'- cCUAGUGGAGU-------UCUGGGUGcGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 16776 0.73 0.293456
Target:  5'- aGGcucagCACCUUcGGACCCugGCCGAc- -3'
miRNA:   3'- -CCua---GUGGAGuUCUGGGugCGGCUcc -5'
22361 3' -54.9 NC_005045.1 + 11083 0.72 0.340436
Target:  5'- uGGGUCGCCUgGAGua-CAUGCaCGAGGu -3'
miRNA:   3'- -CCUAGUGGAgUUCuggGUGCG-GCUCC- -5'
22361 3' -54.9 NC_005045.1 + 24325 0.72 0.357261
Target:  5'- uGGAUCGCCU--GGGCa-ACGUCGAGGc -3'
miRNA:   3'- -CCUAGUGGAguUCUGggUGCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 18036 0.72 0.36589
Target:  5'- aGAUCGCCcacgaaGAGGCCCuuGUCGGGGc -3'
miRNA:   3'- cCUAGUGGag----UUCUGGGugCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 33689 0.71 0.383574
Target:  5'- ----gACCaUCAAGGCCCugGCCGAc- -3'
miRNA:   3'- ccuagUGG-AGUUCUGGGugCGGCUcc -5'
22361 3' -54.9 NC_005045.1 + 7517 0.71 0.401817
Target:  5'- cGGAUCaagaacGCUUCAu-GCCCugGCcCGAGGa -3'
miRNA:   3'- -CCUAG------UGGAGUucUGGGugCG-GCUCC- -5'
22361 3' -54.9 NC_005045.1 + 28532 0.71 0.420601
Target:  5'- cGGAagCGCC--GAGGCUCAgGCCGGGGc -3'
miRNA:   3'- -CCUa-GUGGagUUCUGGGUgCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 32923 0.7 0.47997
Target:  5'- uGGGcCACCUUggGACUCAuCGCCccAGGg -3'
miRNA:   3'- -CCUaGUGGAGuuCUGGGU-GCGGc-UCC- -5'
22361 3' -54.9 NC_005045.1 + 8919 0.69 0.500659
Target:  5'- gGGGUC-CCU---GGCCCAgGCCGAGc -3'
miRNA:   3'- -CCUAGuGGAguuCUGGGUgCGGCUCc -5'
22361 3' -54.9 NC_005045.1 + 26905 0.69 0.500659
Target:  5'- uGGcAUCuuCUUCAGGACCCAaucggUGCCGuAGGc -3'
miRNA:   3'- -CC-UAGu-GGAGUUCUGGGU-----GCGGC-UCC- -5'
22361 3' -54.9 NC_005045.1 + 922 0.69 0.511151
Target:  5'- uGGG--GCCUUcccacgcguauaGAGACCCACGCgugCGAGGc -3'
miRNA:   3'- -CCUagUGGAG------------UUCUGGGUGCG---GCUCC- -5'
22361 3' -54.9 NC_005045.1 + 21846 0.69 0.532399
Target:  5'- cGAUcCGCCgCGAGGCCgACaGCCGGGa -3'
miRNA:   3'- cCUA-GUGGaGUUCUGGgUG-CGGCUCc -5'
22361 3' -54.9 NC_005045.1 + 35945 0.69 0.532399
Target:  5'- cGGAUCGCgUCGAGuACgC-CGUCGAGa -3'
miRNA:   3'- -CCUAGUGgAGUUC-UGgGuGCGGCUCc -5'
22361 3' -54.9 NC_005045.1 + 39348 0.69 0.543143
Target:  5'- cGGGU-GCCgUCGAGGCCCuuGCCGGu- -3'
miRNA:   3'- -CCUAgUGG-AGUUCUGGGugCGGCUcc -5'
22361 3' -54.9 NC_005045.1 + 18242 0.68 0.553957
Target:  5'- cGGAUCAUCgacgccCAGGACCUcgcagucaugGCGCUGcGGg -3'
miRNA:   3'- -CCUAGUGGa-----GUUCUGGG----------UGCGGCuCC- -5'
22361 3' -54.9 NC_005045.1 + 30356 0.68 0.586743
Target:  5'- --cUCGCg-CAGGGCCUggGCCGGGGc -3'
miRNA:   3'- ccuAGUGgaGUUCUGGGugCGGCUCC- -5'
22361 3' -54.9 NC_005045.1 + 32604 0.68 0.597761
Target:  5'- uGA-CAcCCUCAAGACCCugGagggcCUGGGGc -3'
miRNA:   3'- cCUaGU-GGAGUUCUGGGugC-----GGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.