miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22361 5' -60.4 NC_005045.1 + 17525 0.66 0.377847
Target:  5'- uGCUCagCAGGGCuUUGCguugCGCCGuGGUGu -3'
miRNA:   3'- gCGAG--GUCCCGuAGCG----GCGGUuCCAC- -5'
22361 5' -60.4 NC_005045.1 + 30839 0.66 0.376972
Target:  5'- cCGCaCCAGcGGCAgccuccUCGCCGUCGAguacgacgagaacGGUGu -3'
miRNA:   3'- -GCGaGGUC-CCGU------AGCGGCGGUU-------------CCAC- -5'
22361 5' -60.4 NC_005045.1 + 41375 0.66 0.351379
Target:  5'- aGgUCCAGGGCGUCcugauagGCCGCUAcagcgcggaucAGGc- -3'
miRNA:   3'- gCgAGGUCCCGUAG-------CGGCGGU-----------UCCac -5'
22361 5' -60.4 NC_005045.1 + 40612 0.67 0.335819
Target:  5'- uGCcuUCCAGGGCGacaagGCCGgCGAGGg- -3'
miRNA:   3'- gCG--AGGUCCCGUag---CGGCgGUUCCac -5'
22361 5' -60.4 NC_005045.1 + 7601 0.67 0.320768
Target:  5'- uGCugUCCaAGGGCAUCGacuacaacgugaugaCGCCAGGGcUGc -3'
miRNA:   3'- gCG--AGG-UCCCGUAGCg--------------GCGGUUCC-AC- -5'
22361 5' -60.4 NC_005045.1 + 9464 0.67 0.312288
Target:  5'- gGC-CCaacgAGGGCGUCGCCcugGCCGguGGGUu -3'
miRNA:   3'- gCGaGG----UCCCGUAGCGG---CGGU--UCCAc -5'
22361 5' -60.4 NC_005045.1 + 23925 0.67 0.304727
Target:  5'- gGCUCCGGugccguuguacaGGCA--GCCGCCAaccccuGGGUGc -3'
miRNA:   3'- gCGAGGUC------------CCGUagCGGCGGU------UCCAC- -5'
22361 5' -60.4 NC_005045.1 + 17807 0.67 0.304727
Target:  5'- gCGUUCaaugcaauGGC--CGCCGCCGAGGUGg -3'
miRNA:   3'- -GCGAGguc-----CCGuaGCGGCGGUUCCAC- -5'
22361 5' -60.4 NC_005045.1 + 35487 0.67 0.304727
Target:  5'- gGCUgCGGGGuCGUCGCCGgUuacuAGGUc -3'
miRNA:   3'- gCGAgGUCCC-GUAGCGGCgGu---UCCAc -5'
22361 5' -60.4 NC_005045.1 + 12481 0.68 0.290029
Target:  5'- nGCUgaaCAcGGGCgAUCcauCCGCCAGGGUGa -3'
miRNA:   3'- gCGAg--GU-CCCG-UAGc--GGCGGUUCCAC- -5'
22361 5' -60.4 NC_005045.1 + 3034 0.68 0.275893
Target:  5'- uGgUCCAGGGCAgucCGCUGUCcGGGc- -3'
miRNA:   3'- gCgAGGUCCCGUa--GCGGCGGuUCCac -5'
22361 5' -60.4 NC_005045.1 + 3737 0.68 0.275893
Target:  5'- uCGCaggCC-GGGCAgauagcgaccaCGCCGCCGAGGa- -3'
miRNA:   3'- -GCGa--GGuCCCGUa----------GCGGCGGUUCCac -5'
22361 5' -60.4 NC_005045.1 + 14915 0.69 0.249281
Target:  5'- gGCUCCcagcgugccgcaGGuGGCgaauGUCGCCGCCccGGUGg -3'
miRNA:   3'- gCGAGG------------UC-CCG----UAGCGGCGGuuCCAC- -5'
22361 5' -60.4 NC_005045.1 + 16638 0.69 0.249281
Target:  5'- gCGCUgCAcuggcuGGGCcgCaagGCCGCUGAGGUGg -3'
miRNA:   3'- -GCGAgGU------CCCGuaG---CGGCGGUUCCAC- -5'
22361 5' -60.4 NC_005045.1 + 28544 0.7 0.202438
Target:  5'- gGCUcaggCCGGGGCGuUCGgCGUCAAGGg- -3'
miRNA:   3'- gCGA----GGUCCCGU-AGCgGCGGUUCCac -5'
22361 5' -60.4 NC_005045.1 + 34719 0.7 0.197151
Target:  5'- aCGCuUCCAGGGCuucauccgaauGUCGuuGgCGAGGUu -3'
miRNA:   3'- -GCG-AGGUCCCG-----------UAGCggCgGUUCCAc -5'
22361 5' -60.4 NC_005045.1 + 24031 0.71 0.172497
Target:  5'- aGCUgCCAGGGCAggUGCCGCagcacccaGGGGUu -3'
miRNA:   3'- gCGA-GGUCCCGUa-GCGGCGg-------UUCCAc -5'
22361 5' -60.4 NC_005045.1 + 40581 0.73 0.117534
Target:  5'- aGCcgCCAGGGCugCGCCGCgCAGGGg- -3'
miRNA:   3'- gCGa-GGUCCCGuaGCGGCG-GUUCCac -5'
22361 5' -60.4 NC_005045.1 + 12504 0.74 0.108096
Target:  5'- aGcCUUgAGGGCGUCGCCGCU--GGUGc -3'
miRNA:   3'- gC-GAGgUCCCGUAGCGGCGGuuCCAC- -5'
22361 5' -60.4 NC_005045.1 + 39716 0.75 0.093931
Target:  5'- cCGC-CCAGGGCAuacgacagcucgUCGCCGCCGucgccggcaGGGUc -3'
miRNA:   3'- -GCGaGGUCCCGU------------AGCGGCGGU---------UCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.