Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22361 | 5' | -60.4 | NC_005045.1 | + | 17525 | 0.66 | 0.377847 |
Target: 5'- uGCUCagCAGGGCuUUGCguugCGCCGuGGUGu -3' miRNA: 3'- gCGAG--GUCCCGuAGCG----GCGGUuCCAC- -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 30839 | 0.66 | 0.376972 |
Target: 5'- cCGCaCCAGcGGCAgccuccUCGCCGUCGAguacgacgagaacGGUGu -3' miRNA: 3'- -GCGaGGUC-CCGU------AGCGGCGGUU-------------CCAC- -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 41375 | 0.66 | 0.351379 |
Target: 5'- aGgUCCAGGGCGUCcugauagGCCGCUAcagcgcggaucAGGc- -3' miRNA: 3'- gCgAGGUCCCGUAG-------CGGCGGU-----------UCCac -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 40612 | 0.67 | 0.335819 |
Target: 5'- uGCcuUCCAGGGCGacaagGCCGgCGAGGg- -3' miRNA: 3'- gCG--AGGUCCCGUag---CGGCgGUUCCac -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 7601 | 0.67 | 0.320768 |
Target: 5'- uGCugUCCaAGGGCAUCGacuacaacgugaugaCGCCAGGGcUGc -3' miRNA: 3'- gCG--AGG-UCCCGUAGCg--------------GCGGUUCC-AC- -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 9464 | 0.67 | 0.312288 |
Target: 5'- gGC-CCaacgAGGGCGUCGCCcugGCCGguGGGUu -3' miRNA: 3'- gCGaGG----UCCCGUAGCGG---CGGU--UCCAc -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 23925 | 0.67 | 0.304727 |
Target: 5'- gGCUCCGGugccguuguacaGGCA--GCCGCCAaccccuGGGUGc -3' miRNA: 3'- gCGAGGUC------------CCGUagCGGCGGU------UCCAC- -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 17807 | 0.67 | 0.304727 |
Target: 5'- gCGUUCaaugcaauGGC--CGCCGCCGAGGUGg -3' miRNA: 3'- -GCGAGguc-----CCGuaGCGGCGGUUCCAC- -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 35487 | 0.67 | 0.304727 |
Target: 5'- gGCUgCGGGGuCGUCGCCGgUuacuAGGUc -3' miRNA: 3'- gCGAgGUCCC-GUAGCGGCgGu---UCCAc -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 12481 | 0.68 | 0.290029 |
Target: 5'- nGCUgaaCAcGGGCgAUCcauCCGCCAGGGUGa -3' miRNA: 3'- gCGAg--GU-CCCG-UAGc--GGCGGUUCCAC- -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 3034 | 0.68 | 0.275893 |
Target: 5'- uGgUCCAGGGCAgucCGCUGUCcGGGc- -3' miRNA: 3'- gCgAGGUCCCGUa--GCGGCGGuUCCac -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 3737 | 0.68 | 0.275893 |
Target: 5'- uCGCaggCC-GGGCAgauagcgaccaCGCCGCCGAGGa- -3' miRNA: 3'- -GCGa--GGuCCCGUa----------GCGGCGGUUCCac -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 16638 | 0.69 | 0.249281 |
Target: 5'- gCGCUgCAcuggcuGGGCcgCaagGCCGCUGAGGUGg -3' miRNA: 3'- -GCGAgGU------CCCGuaG---CGGCGGUUCCAC- -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 14915 | 0.69 | 0.249281 |
Target: 5'- gGCUCCcagcgugccgcaGGuGGCgaauGUCGCCGCCccGGUGg -3' miRNA: 3'- gCGAGG------------UC-CCG----UAGCGGCGGuuCCAC- -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 28544 | 0.7 | 0.202438 |
Target: 5'- gGCUcaggCCGGGGCGuUCGgCGUCAAGGg- -3' miRNA: 3'- gCGA----GGUCCCGU-AGCgGCGGUUCCac -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 34719 | 0.7 | 0.197151 |
Target: 5'- aCGCuUCCAGGGCuucauccgaauGUCGuuGgCGAGGUu -3' miRNA: 3'- -GCG-AGGUCCCG-----------UAGCggCgGUUCCAc -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 24031 | 0.71 | 0.172497 |
Target: 5'- aGCUgCCAGGGCAggUGCCGCagcacccaGGGGUu -3' miRNA: 3'- gCGA-GGUCCCGUa-GCGGCGg-------UUCCAc -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 40581 | 0.73 | 0.117534 |
Target: 5'- aGCcgCCAGGGCugCGCCGCgCAGGGg- -3' miRNA: 3'- gCGa-GGUCCCGuaGCGGCG-GUUCCac -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 12504 | 0.74 | 0.108096 |
Target: 5'- aGcCUUgAGGGCGUCGCCGCU--GGUGc -3' miRNA: 3'- gC-GAGgUCCCGUAGCGGCGGuuCCAC- -5' |
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22361 | 5' | -60.4 | NC_005045.1 | + | 39716 | 0.75 | 0.093931 |
Target: 5'- cCGC-CCAGGGCAuacgacagcucgUCGCCGCCGucgccggcaGGGUc -3' miRNA: 3'- -GCGaGGUCCCGU------------AGCGGCGGU---------UCCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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