miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22362 3' -59.3 NC_005045.1 + 35915 0.66 0.442106
Target:  5'- aGGUUCGCGGUGuugaugccuuccuGCACaGCguaCAGGAg -3'
miRNA:   3'- -CCAAGCGCCGU-------------CGUGgCGag-GUCCUg -5'
22362 3' -59.3 NC_005045.1 + 26882 0.66 0.43344
Target:  5'- cGGUgcCGUaGGCGGC-CCGCUcugcCCAGcGGCg -3'
miRNA:   3'- -CCAa-GCG-CCGUCGuGGCGA----GGUC-CUG- -5'
22362 3' -59.3 NC_005045.1 + 23435 0.66 0.43344
Target:  5'- gGGUUgaccUGCGGCAgGCACCGCcaCCGGcugguagugcGGCg -3'
miRNA:   3'- -CCAA----GCGCCGU-CGUGGCGa-GGUC----------CUG- -5'
22362 3' -59.3 NC_005045.1 + 9125 0.66 0.43344
Target:  5'- --gUCGUGGC-GCACCGCcaUCuCGcGGACc -3'
miRNA:   3'- ccaAGCGCCGuCGUGGCG--AG-GU-CCUG- -5'
22362 3' -59.3 NC_005045.1 + 33950 0.66 0.432483
Target:  5'- cGggCGCGGgacagggcuacCGGCAuCCGCUCCGaguucauGGGCg -3'
miRNA:   3'- cCaaGCGCC-----------GUCGU-GGCGAGGU-------CCUG- -5'
22362 3' -59.3 NC_005045.1 + 30656 0.66 0.414541
Target:  5'- cGUUgGCGGCGGCGau-CUCCAgaaGGGCu -3'
miRNA:   3'- cCAAgCGCCGUCGUggcGAGGU---CCUG- -5'
22362 3' -59.3 NC_005045.1 + 13834 0.66 0.405283
Target:  5'- cGGcagCGCGGCAGCACUGguggCCAGc-- -3'
miRNA:   3'- -CCaa-GCGCCGUCGUGGCga--GGUCcug -5'
22362 3' -59.3 NC_005045.1 + 10125 0.66 0.404364
Target:  5'- uGGUguccCGCaGCgGGCGCCGCUucccugcCCuGGACg -3'
miRNA:   3'- -CCAa---GCGcCG-UCGUGGCGA-------GGuCCUG- -5'
22362 3' -59.3 NC_005045.1 + 23673 0.67 0.378307
Target:  5'- cGGUUCuCGGCGGCuuuGCCGaaggCUcGGACg -3'
miRNA:   3'- -CCAAGcGCCGUCG---UGGCga--GGuCCUG- -5'
22362 3' -59.3 NC_005045.1 + 32993 0.67 0.378307
Target:  5'- ---aC-CGGCGGCGCggucuUGCUUCAGGGCg -3'
miRNA:   3'- ccaaGcGCCGUCGUG-----GCGAGGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 1977 0.67 0.369587
Target:  5'- aGGgUUGUGGUAGCGuCCuggcgcugGCUCCGGGuCg -3'
miRNA:   3'- -CCaAGCGCCGUCGU-GG--------CGAGGUCCuG- -5'
22362 3' -59.3 NC_005045.1 + 26068 0.67 0.369587
Target:  5'- aGGUUCGUguGGUAGaggaACgGCcucggCCAGGGCu -3'
miRNA:   3'- -CCAAGCG--CCGUCg---UGgCGa----GGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 3775 0.67 0.369587
Target:  5'- aGUUCGCGGU-GC-CCGCcgguauugUCCgcAGGACg -3'
miRNA:   3'- cCAAGCGCCGuCGuGGCG--------AGG--UCCUG- -5'
22362 3' -59.3 NC_005045.1 + 41303 0.67 0.361005
Target:  5'- uGUUCGCa-CAGCACaGCgggcgCCGGGGCg -3'
miRNA:   3'- cCAAGCGccGUCGUGgCGa----GGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 41504 0.67 0.352563
Target:  5'- --aUCGCaGCAGcCACUGC-CCuGGGCg -3'
miRNA:   3'- ccaAGCGcCGUC-GUGGCGaGGuCCUG- -5'
22362 3' -59.3 NC_005045.1 + 25788 0.68 0.312477
Target:  5'- ----gGUGGCGGCGCaGCUUgAGGACc -3'
miRNA:   3'- ccaagCGCCGUCGUGgCGAGgUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 684 0.68 0.297439
Target:  5'- aGGaccaGCGGCAGCACaagcacaGCgCCAGGGa -3'
miRNA:   3'- -CCaag-CGCCGUCGUGg------CGaGGUCCUg -5'
22362 3' -59.3 NC_005045.1 + 40727 0.69 0.275944
Target:  5'- --aUCGUcaucuGGUAGCACUGCUCCGGuguGGCu -3'
miRNA:   3'- ccaAGCG-----CCGUCGUGGCGAGGUC---CUG- -5'
22362 3' -59.3 NC_005045.1 + 30832 0.69 0.262316
Target:  5'- ---aUGCGGCuuGUGCUGCUcggCCAGGACg -3'
miRNA:   3'- ccaaGCGCCGu-CGUGGCGA---GGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 28484 0.69 0.262316
Target:  5'- --aUCGCgGGCAGCGgCGC-CCAGGu- -3'
miRNA:   3'- ccaAGCG-CCGUCGUgGCGaGGUCCug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.