Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22362 | 3' | -59.3 | NC_005045.1 | + | 35915 | 0.66 | 0.442106 |
Target: 5'- aGGUUCGCGGUGuugaugccuuccuGCACaGCguaCAGGAg -3' miRNA: 3'- -CCAAGCGCCGU-------------CGUGgCGag-GUCCUg -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 26882 | 0.66 | 0.43344 |
Target: 5'- cGGUgcCGUaGGCGGC-CCGCUcugcCCAGcGGCg -3' miRNA: 3'- -CCAa-GCG-CCGUCGuGGCGA----GGUC-CUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 23435 | 0.66 | 0.43344 |
Target: 5'- gGGUUgaccUGCGGCAgGCACCGCcaCCGGcugguagugcGGCg -3' miRNA: 3'- -CCAA----GCGCCGU-CGUGGCGa-GGUC----------CUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 9125 | 0.66 | 0.43344 |
Target: 5'- --gUCGUGGC-GCACCGCcaUCuCGcGGACc -3' miRNA: 3'- ccaAGCGCCGuCGUGGCG--AG-GU-CCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 33950 | 0.66 | 0.432483 |
Target: 5'- cGggCGCGGgacagggcuacCGGCAuCCGCUCCGaguucauGGGCg -3' miRNA: 3'- cCaaGCGCC-----------GUCGU-GGCGAGGU-------CCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 30656 | 0.66 | 0.414541 |
Target: 5'- cGUUgGCGGCGGCGau-CUCCAgaaGGGCu -3' miRNA: 3'- cCAAgCGCCGUCGUggcGAGGU---CCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 13834 | 0.66 | 0.405283 |
Target: 5'- cGGcagCGCGGCAGCACUGguggCCAGc-- -3' miRNA: 3'- -CCaa-GCGCCGUCGUGGCga--GGUCcug -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 10125 | 0.66 | 0.404364 |
Target: 5'- uGGUguccCGCaGCgGGCGCCGCUucccugcCCuGGACg -3' miRNA: 3'- -CCAa---GCGcCG-UCGUGGCGA-------GGuCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 23673 | 0.67 | 0.378307 |
Target: 5'- cGGUUCuCGGCGGCuuuGCCGaaggCUcGGACg -3' miRNA: 3'- -CCAAGcGCCGUCG---UGGCga--GGuCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 32993 | 0.67 | 0.378307 |
Target: 5'- ---aC-CGGCGGCGCggucuUGCUUCAGGGCg -3' miRNA: 3'- ccaaGcGCCGUCGUG-----GCGAGGUCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 1977 | 0.67 | 0.369587 |
Target: 5'- aGGgUUGUGGUAGCGuCCuggcgcugGCUCCGGGuCg -3' miRNA: 3'- -CCaAGCGCCGUCGU-GG--------CGAGGUCCuG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 26068 | 0.67 | 0.369587 |
Target: 5'- aGGUUCGUguGGUAGaggaACgGCcucggCCAGGGCu -3' miRNA: 3'- -CCAAGCG--CCGUCg---UGgCGa----GGUCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 3775 | 0.67 | 0.369587 |
Target: 5'- aGUUCGCGGU-GC-CCGCcgguauugUCCgcAGGACg -3' miRNA: 3'- cCAAGCGCCGuCGuGGCG--------AGG--UCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 41303 | 0.67 | 0.361005 |
Target: 5'- uGUUCGCa-CAGCACaGCgggcgCCGGGGCg -3' miRNA: 3'- cCAAGCGccGUCGUGgCGa----GGUCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 41504 | 0.67 | 0.352563 |
Target: 5'- --aUCGCaGCAGcCACUGC-CCuGGGCg -3' miRNA: 3'- ccaAGCGcCGUC-GUGGCGaGGuCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 25788 | 0.68 | 0.312477 |
Target: 5'- ----gGUGGCGGCGCaGCUUgAGGACc -3' miRNA: 3'- ccaagCGCCGUCGUGgCGAGgUCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 684 | 0.68 | 0.297439 |
Target: 5'- aGGaccaGCGGCAGCACaagcacaGCgCCAGGGa -3' miRNA: 3'- -CCaag-CGCCGUCGUGg------CGaGGUCCUg -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 40727 | 0.69 | 0.275944 |
Target: 5'- --aUCGUcaucuGGUAGCACUGCUCCGGuguGGCu -3' miRNA: 3'- ccaAGCG-----CCGUCGUGGCGAGGUC---CUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 30832 | 0.69 | 0.262316 |
Target: 5'- ---aUGCGGCuuGUGCUGCUcggCCAGGACg -3' miRNA: 3'- ccaaGCGCCGu-CGUGGCGA---GGUCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 28484 | 0.69 | 0.262316 |
Target: 5'- --aUCGCgGGCAGCGgCGC-CCAGGu- -3' miRNA: 3'- ccaAGCG-CCGUCGUgGCGaGGUCCug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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