miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22362 3' -59.3 NC_005045.1 + 40727 0.69 0.275944
Target:  5'- --aUCGUcaucuGGUAGCACUGCUCCGGuguGGCu -3'
miRNA:   3'- ccaAGCG-----CCGUCGUGGCGAGGUC---CUG- -5'
22362 3' -59.3 NC_005045.1 + 23862 0.77 0.070378
Target:  5'- uGGUUgaagaCGcCGGCAGC-CUGCUUCAGGACg -3'
miRNA:   3'- -CCAA-----GC-GCCGUCGuGGCGAGGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 40631 0.76 0.090969
Target:  5'- cGGUagGCGGUAGUcucACUGCcuUCCAGGGCg -3'
miRNA:   3'- -CCAagCGCCGUCG---UGGCG--AGGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 23266 0.73 0.142302
Target:  5'- uGGUUCGgGGuCGGCGCgGCagCCGGGGg -3'
miRNA:   3'- -CCAAGCgCC-GUCGUGgCGa-GGUCCUg -5'
22362 3' -59.3 NC_005045.1 + 15077 0.73 0.158776
Target:  5'- -cUUCGaCGGCAGCgggaGCCGCcaCCGGGGCc -3'
miRNA:   3'- ccAAGC-GCCGUCG----UGGCGa-GGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 18548 0.72 0.167643
Target:  5'- -cUUCG-GGCAGCACCGCgUCCAGa-- -3'
miRNA:   3'- ccAAGCgCCGUCGUGGCG-AGGUCcug -5'
22362 3' -59.3 NC_005045.1 + 10195 0.72 0.172241
Target:  5'- aGGgaaGCGGC-GC-CCGCUgCGGGACa -3'
miRNA:   3'- -CCaagCGCCGuCGuGGCGAgGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 41597 0.72 0.176952
Target:  5'- gGGUccggUGgGGUAGCGCCGCccucgccgcCCAGGGCa -3'
miRNA:   3'- -CCAa---GCgCCGUCGUGGCGa--------GGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 30832 0.69 0.262316
Target:  5'- ---aUGCGGCuuGUGCUGCUcggCCAGGACg -3'
miRNA:   3'- ccaaGCGCCGu-CGUGGCGA---GGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 18775 0.79 0.057539
Target:  5'- aGGgUCGCGGCGGCGCCagcaucacGCUCCggccAGGGCc -3'
miRNA:   3'- -CCaAGCGCCGUCGUGG--------CGAGG----UCCUG- -5'
22362 3' -59.3 NC_005045.1 + 30656 0.66 0.414541
Target:  5'- cGUUgGCGGCGGCGau-CUCCAgaaGGGCu -3'
miRNA:   3'- cCAAgCGCCGUCGUggcGAGGU---CCUG- -5'
22362 3' -59.3 NC_005045.1 + 32993 0.67 0.378307
Target:  5'- ---aC-CGGCGGCGCggucuUGCUUCAGGGCg -3'
miRNA:   3'- ccaaGcGCCGUCGUG-----GCGAGGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 684 0.68 0.297439
Target:  5'- aGGaccaGCGGCAGCACaagcacaGCgCCAGGGa -3'
miRNA:   3'- -CCaag-CGCCGUCGUGg------CGaGGUCCUg -5'
22362 3' -59.3 NC_005045.1 + 26882 0.66 0.43344
Target:  5'- cGGUgcCGUaGGCGGC-CCGCUcugcCCAGcGGCg -3'
miRNA:   3'- -CCAa-GCG-CCGUCGuGGCGA----GGUC-CUG- -5'
22362 3' -59.3 NC_005045.1 + 41303 0.67 0.361005
Target:  5'- uGUUCGCa-CAGCACaGCgggcgCCGGGGCg -3'
miRNA:   3'- cCAAGCGccGUCGUGgCGa----GGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 23673 0.67 0.378307
Target:  5'- cGGUUCuCGGCGGCuuuGCCGaaggCUcGGACg -3'
miRNA:   3'- -CCAAGcGCCGUCG---UGGCga--GGuCCUG- -5'
22362 3' -59.3 NC_005045.1 + 23435 0.66 0.43344
Target:  5'- gGGUUgaccUGCGGCAgGCACCGCcaCCGGcugguagugcGGCg -3'
miRNA:   3'- -CCAA----GCGCCGU-CGUGGCGa-GGUC----------CUG- -5'
22362 3' -59.3 NC_005045.1 + 35915 0.66 0.442106
Target:  5'- aGGUUCGCGGUGuugaugccuuccuGCACaGCguaCAGGAg -3'
miRNA:   3'- -CCAAGCGCCGU-------------CGUGgCGag-GUCCUg -5'
22362 3' -59.3 NC_005045.1 + 26068 0.67 0.369587
Target:  5'- aGGUUCGUguGGUAGaggaACgGCcucggCCAGGGCu -3'
miRNA:   3'- -CCAAGCG--CCGUCg---UGgCGa----GGUCCUG- -5'
22362 3' -59.3 NC_005045.1 + 1977 0.67 0.369587
Target:  5'- aGGgUUGUGGUAGCGuCCuggcgcugGCUCCGGGuCg -3'
miRNA:   3'- -CCaAGCGCCGUCGU-GG--------CGAGGUCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.