Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22362 | 3' | -59.3 | NC_005045.1 | + | 30656 | 0.66 | 0.414541 |
Target: 5'- cGUUgGCGGCGGCGau-CUCCAgaaGGGCu -3' miRNA: 3'- cCAAgCGCCGUCGUggcGAGGU---CCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 30832 | 0.69 | 0.262316 |
Target: 5'- ---aUGCGGCuuGUGCUGCUcggCCAGGACg -3' miRNA: 3'- ccaaGCGCCGu-CGUGGCGA---GGUCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 32558 | 0.7 | 0.224707 |
Target: 5'- ---aCGcCGaGguGCcuaaGCCGCUCCAGGGCa -3' miRNA: 3'- ccaaGC-GC-CguCG----UGGCGAGGUCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 32744 | 1.12 | 0.000174 |
Target: 5'- aGGUUCGCGGCAGCACCGCUCCAGGACg -3' miRNA: 3'- -CCAAGCGCCGUCGUGGCGAGGUCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 32993 | 0.67 | 0.378307 |
Target: 5'- ---aC-CGGCGGCGCggucuUGCUUCAGGGCg -3' miRNA: 3'- ccaaGcGCCGUCGUG-----GCGAGGUCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 33610 | 0.72 | 0.181776 |
Target: 5'- aGGUcaCGCGGgAGCuGCUGCgCCGGGACc -3' miRNA: 3'- -CCAa-GCGCCgUCG-UGGCGaGGUCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 33950 | 0.66 | 0.432483 |
Target: 5'- cGggCGCGGgacagggcuacCGGCAuCCGCUCCGaguucauGGGCg -3' miRNA: 3'- cCaaGCGCC-----------GUCGU-GGCGAGGU-------CCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 35915 | 0.66 | 0.442106 |
Target: 5'- aGGUUCGCGGUGuugaugccuuccuGCACaGCguaCAGGAg -3' miRNA: 3'- -CCAAGCGCCGU-------------CGUGgCGag-GUCCUg -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 40631 | 0.76 | 0.090969 |
Target: 5'- cGGUagGCGGUAGUcucACUGCcuUCCAGGGCg -3' miRNA: 3'- -CCAagCGCCGUCG---UGGCG--AGGUCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 40727 | 0.69 | 0.275944 |
Target: 5'- --aUCGUcaucuGGUAGCACUGCUCCGGuguGGCu -3' miRNA: 3'- ccaAGCG-----CCGUCGUGGCGAGGUC---CUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 41303 | 0.67 | 0.361005 |
Target: 5'- uGUUCGCa-CAGCACaGCgggcgCCGGGGCg -3' miRNA: 3'- cCAAGCGccGUCGUGgCGa----GGUCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 41504 | 0.67 | 0.352563 |
Target: 5'- --aUCGCaGCAGcCACUGC-CCuGGGCg -3' miRNA: 3'- ccaAGCGcCGUC-GUGGCGaGGuCCUG- -5' |
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22362 | 3' | -59.3 | NC_005045.1 | + | 41597 | 0.72 | 0.176952 |
Target: 5'- gGGUccggUGgGGUAGCGCCGCccucgccgcCCAGGGCa -3' miRNA: 3'- -CCAa---GCgCCGUCGUGGCGa--------GGUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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