miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22363 3' -54 NC_005045.1 + 15377 0.66 0.700298
Target:  5'- uGCUGGAaccgCUgCGGCGGGCcGUGGCg- -3'
miRNA:   3'- -CGACUUga--GG-GCUGCUCGaUACCGac -5'
22363 3' -54 NC_005045.1 + 39564 0.66 0.689122
Target:  5'- aGCUGuacCUgCCGGCGcugauGGCUGgaGGCUGg -3'
miRNA:   3'- -CGACuu-GAgGGCUGC-----UCGAUa-CCGAC- -5'
22363 3' -54 NC_005045.1 + 23008 0.67 0.666605
Target:  5'- --aGAGCg-CCGACGAGCUAcaGGCa- -3'
miRNA:   3'- cgaCUUGagGGCUGCUCGAUa-CCGac -5'
22363 3' -54 NC_005045.1 + 28033 0.67 0.666605
Target:  5'- gGCUGGA---CCGGCGAGUuccUGUGGCg- -3'
miRNA:   3'- -CGACUUgagGGCUGCUCG---AUACCGac -5'
22363 3' -54 NC_005045.1 + 39498 0.67 0.621251
Target:  5'- cCUGGGCUgCCGACGAGCgcuucaaGCUc -3'
miRNA:   3'- cGACUUGAgGGCUGCUCGauac---CGAc -5'
22363 3' -54 NC_005045.1 + 22406 0.68 0.598591
Target:  5'- uGCUGAGCgagaaacucggCCUGuACGAGCUGgagucGCUGg -3'
miRNA:   3'- -CGACUUGa----------GGGC-UGCUCGAUac---CGAC- -5'
22363 3' -54 NC_005045.1 + 19851 0.68 0.598591
Target:  5'- cCUGGACUaCCuCGACGAGUc-UGGCg- -3'
miRNA:   3'- cGACUUGA-GG-GCUGCUCGauACCGac -5'
22363 3' -54 NC_005045.1 + 25944 0.68 0.598591
Target:  5'- cGCUGAGCUggCCCGGCaGGCgcucgaagGGCa- -3'
miRNA:   3'- -CGACUUGA--GGGCUGcUCGaua-----CCGac -5'
22363 3' -54 NC_005045.1 + 5071 0.68 0.57493
Target:  5'- cCUGGGCUgCCGACGAcuggacgGCgcggAUGGCg- -3'
miRNA:   3'- cGACUUGAgGGCUGCU-------CGa---UACCGac -5'
22363 3' -54 NC_005045.1 + 36672 0.69 0.520712
Target:  5'- ----uACUCCCGcUGGGCUGaGGCUGg -3'
miRNA:   3'- cgacuUGAGGGCuGCUCGAUaCCGAC- -5'
22363 3' -54 NC_005045.1 + 2925 0.7 0.48851
Target:  5'- aCUG-ACUCCUGGCGGGUUcGUGGUa- -3'
miRNA:   3'- cGACuUGAGGGCUGCUCGA-UACCGac -5'
22363 3' -54 NC_005045.1 + 6947 0.7 0.48851
Target:  5'- cGCUGAACUgguacgggCCGcCGAGC--UGGCUGg -3'
miRNA:   3'- -CGACUUGAg-------GGCuGCUCGauACCGAC- -5'
22363 3' -54 NC_005045.1 + 34554 0.7 0.463436
Target:  5'- uGCUGAACUCCCGcAUGGGUgacuucguuggGGCc- -3'
miRNA:   3'- -CGACUUGAGGGC-UGCUCGaua--------CCGac -5'
22363 3' -54 NC_005045.1 + 41849 0.83 0.064113
Target:  5'- gGCUGAGCUggucgcacacCUCGACGAGCUgAUGGCUGc -3'
miRNA:   3'- -CGACUUGA----------GGGCUGCUCGA-UACCGAC- -5'
22363 3' -54 NC_005045.1 + 33562 1.1 0.000732
Target:  5'- cGCUGAACUCCCGACGAGCUAUGGCUGu -3'
miRNA:   3'- -CGACUUGAGGGCUGCUCGAUACCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.