miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22364 3' -59.3 NC_005045.1 + 27407 0.66 0.441596
Target:  5'- gGGCCAUCucaugcAGGCCCaugaaacccagGGCaCGcuCCGCa -3'
miRNA:   3'- gCUGGUAGu-----UCCGGGa----------CCG-GCu-GGCG- -5'
22364 3' -59.3 NC_005045.1 + 32351 0.66 0.46105
Target:  5'- uGACCGcCGAGGa---GGCCG-CCGCa -3'
miRNA:   3'- gCUGGUaGUUCCgggaCCGGCuGGCG- -5'
22364 3' -59.3 NC_005045.1 + 27795 0.66 0.432046
Target:  5'- cCGugUAUCAGcuacaGCCCgUGGCCGG-CGCc -3'
miRNA:   3'- -GCugGUAGUUc----CGGG-ACCGGCUgGCG- -5'
22364 3' -59.3 NC_005045.1 + 2825 0.66 0.432046
Target:  5'- uGAUCGcaaucccCAAGGaCCC-GGCgGGCCGCu -3'
miRNA:   3'- gCUGGUa------GUUCC-GGGaCCGgCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 4760 0.66 0.413312
Target:  5'- -cACCA-CAccGCCCUGGCCaagcuGACCGa -3'
miRNA:   3'- gcUGGUaGUucCGGGACCGG-----CUGGCg -5'
22364 3' -59.3 NC_005045.1 + 28686 0.66 0.413312
Target:  5'- --uCCAUCcAGGCUCaggcuaaGGCCGGCCuGCu -3'
miRNA:   3'- gcuGGUAGuUCCGGGa------CCGGCUGG-CG- -5'
22364 3' -59.3 NC_005045.1 + 34263 0.66 0.413312
Target:  5'- -aGCCgGUCGAGGUCCcGGUCGAUCa- -3'
miRNA:   3'- gcUGG-UAGUUCCGGGaCCGGCUGGcg -5'
22364 3' -59.3 NC_005045.1 + 7284 0.66 0.441596
Target:  5'- -uGCCAggUCAugcGGGCgCCguaGGCgGGCCGCc -3'
miRNA:   3'- gcUGGU--AGU---UCCG-GGa--CCGgCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 21912 0.67 0.404134
Target:  5'- cCGGCUGUC--GGCCUcgcGGCgGAUCGCa -3'
miRNA:   3'- -GCUGGUAGuuCCGGGa--CCGgCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 9533 0.67 0.404134
Target:  5'- cCGGCCAgggCGAcGCCCUcguugGGCCGugCa- -3'
miRNA:   3'- -GCUGGUa--GUUcCGGGA-----CCGGCugGcg -5'
22364 3' -59.3 NC_005045.1 + 24028 0.67 0.392399
Target:  5'- -uGCCAgggCAGGuGCCgcagcacccaggggUUGGCCGGCUGCc -3'
miRNA:   3'- gcUGGUa--GUUC-CGG--------------GACCGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 31305 0.67 0.368744
Target:  5'- uCGGCCAaccUCAca-CCCUGGUCGAgUGCg -3'
miRNA:   3'- -GCUGGU---AGUuccGGGACCGGCUgGCG- -5'
22364 3' -59.3 NC_005045.1 + 34897 0.67 0.360235
Target:  5'- gGGCCGcuUCAuccCCCUGcGCCGcCCGCg -3'
miRNA:   3'- gCUGGU--AGUuccGGGAC-CGGCuGGCG- -5'
22364 3' -59.3 NC_005045.1 + 8894 0.67 0.389722
Target:  5'- uGAUccgCAUCAAGGacuuccacgggggguCCCUGGCCcaGGCCGa -3'
miRNA:   3'- gCUG---GUAGUUCC---------------GGGACCGG--CUGGCg -5'
22364 3' -59.3 NC_005045.1 + 23053 0.67 0.360235
Target:  5'- aGGCCG-CGcAGGCCCaGGCCG--CGCa -3'
miRNA:   3'- gCUGGUaGU-UCCGGGaCCGGCugGCG- -5'
22364 3' -59.3 NC_005045.1 + 8777 0.67 0.366177
Target:  5'- gGAUCAagccgcgccuguacUCGGcGGCCCUGGguaUGACCGUg -3'
miRNA:   3'- gCUGGU--------------AGUU-CCGGGACCg--GCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 14068 0.67 0.368744
Target:  5'- uGGCCAaCAAGGCU---GCCGAgaCCGCa -3'
miRNA:   3'- gCUGGUaGUUCCGGgacCGGCU--GGCG- -5'
22364 3' -59.3 NC_005045.1 + 38847 0.67 0.395088
Target:  5'- -cGCCc-CGAGGCCCgcaUGGgUGACCGUa -3'
miRNA:   3'- gcUGGuaGUUCCGGG---ACCgGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 22828 0.67 0.395088
Target:  5'- cCGGCUAUCGAGacgggccuucccGCCCUGucCCGcuccGCCGCu -3'
miRNA:   3'- -GCUGGUAGUUC------------CGGGACc-GGC----UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 41132 0.67 0.368744
Target:  5'- aCGcACCucCAGGGCCUccgcacgGGCCGucuGCCGCu -3'
miRNA:   3'- -GC-UGGuaGUUCCGGGa------CCGGC---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.