Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22364 | 3' | -59.3 | NC_005045.1 | + | 33687 | 1.11 | 0.000219 |
Target: 5'- cCGACCAUCAAGGCCCUGGCCGACCGCu -3' miRNA: 3'- -GCUGGUAGUUCCGGGACCGGCUGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 39344 | 0.8 | 0.050388 |
Target: 5'- -uGCCGUCGAGGCCCUuGCCgGugCGCg -3' miRNA: 3'- gcUGGUAGUUCCGGGAcCGG-CugGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 30510 | 0.79 | 0.054927 |
Target: 5'- gCGACCAUCGacgAGGCgaaCUGGCUGGCCaGCg -3' miRNA: 3'- -GCUGGUAGU---UCCGg--GACCGGCUGG-CG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 30751 | 0.77 | 0.075204 |
Target: 5'- aGACCAUCGGaaccGUCCUGGCCGagcagcacaaGCCGCa -3' miRNA: 3'- gCUGGUAGUUc---CGGGACCGGC----------UGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 41472 | 0.77 | 0.079593 |
Target: 5'- aGGCCgauGUCAAGGCCaaGGCC-ACCGCu -3' miRNA: 3'- gCUGG---UAGUUCCGGgaCCGGcUGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 5219 | 0.76 | 0.096962 |
Target: 5'- gGAUCGUCuGGaagcuGCCCUGGCCGugUGCc -3' miRNA: 3'- gCUGGUAGuUC-----CGGGACCGGCugGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 7249 | 0.76 | 0.099719 |
Target: 5'- gGACauguUCGAGGCCCgaGGCgGGCUGCg -3' miRNA: 3'- gCUGgu--AGUUCCGGGa-CCGgCUGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 18684 | 0.74 | 0.125962 |
Target: 5'- uGACCuggggcGGCCCUGGCCGgagcgugaugcuggcGCCGCc -3' miRNA: 3'- gCUGGuaguu-CCGGGACCGGC---------------UGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 32784 | 0.73 | 0.163702 |
Target: 5'- gGACCAggguaUCGAGGCCCUGaGUgGAguggagucCCGCu -3' miRNA: 3'- gCUGGU-----AGUUCCGGGAC-CGgCU--------GGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 34764 | 0.73 | 0.168172 |
Target: 5'- gCGAuCCAUgAAGGUguCCUGGCUGGCCa- -3' miRNA: 3'- -GCU-GGUAgUUCCG--GGACCGGCUGGcg -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 25984 | 0.73 | 0.168172 |
Target: 5'- cCGACCA-----GCCCUGGCCGagGCCGUu -3' miRNA: 3'- -GCUGGUaguucCGGGACCGGC--UGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 9418 | 0.72 | 0.172751 |
Target: 5'- cCGACCGgggUCAAGGCCCUGuuGCUGcGCCuGUa -3' miRNA: 3'- -GCUGGU---AGUUCCGGGAC--CGGC-UGG-CG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 36152 | 0.72 | 0.177441 |
Target: 5'- gCGACC-UCAAcaucguggccGGCCCUGGCgUGACCa- -3' miRNA: 3'- -GCUGGuAGUU----------CCGGGACCG-GCUGGcg -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 33750 | 0.71 | 0.219175 |
Target: 5'- uCGGCCA---GGGCCUugaUGGUCGGCgGCa -3' miRNA: 3'- -GCUGGUaguUCCGGG---ACCGGCUGgCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 5426 | 0.71 | 0.219175 |
Target: 5'- -aACCAUCAuGGCCUggguaugccuGCUGACCGCa -3' miRNA: 3'- gcUGGUAGUuCCGGGac--------CGGCUGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 26183 | 0.7 | 0.24303 |
Target: 5'- uGACCuguUCAucgccaaccugAGuguaaaGCCCgaGGCCGACCGCa -3' miRNA: 3'- gCUGGu--AGU-----------UC------CGGGa-CCGGCUGGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 41061 | 0.7 | 0.255749 |
Target: 5'- aCGGCCcgUgcgGAGGCCCUGGagGugCGUu -3' miRNA: 3'- -GCUGGuaG---UUCCGGGACCggCugGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 30238 | 0.7 | 0.26231 |
Target: 5'- aGGCCGagCAGGGCgCCgUGGCCuGGgCGCu -3' miRNA: 3'- gCUGGUa-GUUCCG-GG-ACCGG-CUgGCG- -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 24335 | 0.69 | 0.269007 |
Target: 5'- gGGCaaCGUCGAGGCCaagGGCCGucguGCCGg -3' miRNA: 3'- gCUG--GUAGUUCCGGga-CCGGC----UGGCg -5' |
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22364 | 3' | -59.3 | NC_005045.1 | + | 41168 | 0.69 | 0.269007 |
Target: 5'- gGACCAgaaccGCCCgugGGCUGACCGg -3' miRNA: 3'- gCUGGUaguucCGGGa--CCGGCUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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