miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22364 3' -59.3 NC_005045.1 + 33687 1.11 0.000219
Target:  5'- cCGACCAUCAAGGCCCUGGCCGACCGCu -3'
miRNA:   3'- -GCUGGUAGUUCCGGGACCGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 39344 0.8 0.050388
Target:  5'- -uGCCGUCGAGGCCCUuGCCgGugCGCg -3'
miRNA:   3'- gcUGGUAGUUCCGGGAcCGG-CugGCG- -5'
22364 3' -59.3 NC_005045.1 + 30510 0.79 0.054927
Target:  5'- gCGACCAUCGacgAGGCgaaCUGGCUGGCCaGCg -3'
miRNA:   3'- -GCUGGUAGU---UCCGg--GACCGGCUGG-CG- -5'
22364 3' -59.3 NC_005045.1 + 30751 0.77 0.075204
Target:  5'- aGACCAUCGGaaccGUCCUGGCCGagcagcacaaGCCGCa -3'
miRNA:   3'- gCUGGUAGUUc---CGGGACCGGC----------UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 41472 0.77 0.079593
Target:  5'- aGGCCgauGUCAAGGCCaaGGCC-ACCGCu -3'
miRNA:   3'- gCUGG---UAGUUCCGGgaCCGGcUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 5219 0.76 0.096962
Target:  5'- gGAUCGUCuGGaagcuGCCCUGGCCGugUGCc -3'
miRNA:   3'- gCUGGUAGuUC-----CGGGACCGGCugGCG- -5'
22364 3' -59.3 NC_005045.1 + 7249 0.76 0.099719
Target:  5'- gGACauguUCGAGGCCCgaGGCgGGCUGCg -3'
miRNA:   3'- gCUGgu--AGUUCCGGGa-CCGgCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 18684 0.74 0.125962
Target:  5'- uGACCuggggcGGCCCUGGCCGgagcgugaugcuggcGCCGCc -3'
miRNA:   3'- gCUGGuaguu-CCGGGACCGGC---------------UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 32784 0.73 0.163702
Target:  5'- gGACCAggguaUCGAGGCCCUGaGUgGAguggagucCCGCu -3'
miRNA:   3'- gCUGGU-----AGUUCCGGGAC-CGgCU--------GGCG- -5'
22364 3' -59.3 NC_005045.1 + 34764 0.73 0.168172
Target:  5'- gCGAuCCAUgAAGGUguCCUGGCUGGCCa- -3'
miRNA:   3'- -GCU-GGUAgUUCCG--GGACCGGCUGGcg -5'
22364 3' -59.3 NC_005045.1 + 25984 0.73 0.168172
Target:  5'- cCGACCA-----GCCCUGGCCGagGCCGUu -3'
miRNA:   3'- -GCUGGUaguucCGGGACCGGC--UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 9418 0.72 0.172751
Target:  5'- cCGACCGgggUCAAGGCCCUGuuGCUGcGCCuGUa -3'
miRNA:   3'- -GCUGGU---AGUUCCGGGAC--CGGC-UGG-CG- -5'
22364 3' -59.3 NC_005045.1 + 36152 0.72 0.177441
Target:  5'- gCGACC-UCAAcaucguggccGGCCCUGGCgUGACCa- -3'
miRNA:   3'- -GCUGGuAGUU----------CCGGGACCG-GCUGGcg -5'
22364 3' -59.3 NC_005045.1 + 33750 0.71 0.219175
Target:  5'- uCGGCCA---GGGCCUugaUGGUCGGCgGCa -3'
miRNA:   3'- -GCUGGUaguUCCGGG---ACCGGCUGgCG- -5'
22364 3' -59.3 NC_005045.1 + 5426 0.71 0.219175
Target:  5'- -aACCAUCAuGGCCUggguaugccuGCUGACCGCa -3'
miRNA:   3'- gcUGGUAGUuCCGGGac--------CGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 26183 0.7 0.24303
Target:  5'- uGACCuguUCAucgccaaccugAGuguaaaGCCCgaGGCCGACCGCa -3'
miRNA:   3'- gCUGGu--AGU-----------UC------CGGGa-CCGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 41061 0.7 0.255749
Target:  5'- aCGGCCcgUgcgGAGGCCCUGGagGugCGUu -3'
miRNA:   3'- -GCUGGuaG---UUCCGGGACCggCugGCG- -5'
22364 3' -59.3 NC_005045.1 + 30238 0.7 0.26231
Target:  5'- aGGCCGagCAGGGCgCCgUGGCCuGGgCGCu -3'
miRNA:   3'- gCUGGUa-GUUCCG-GG-ACCGG-CUgGCG- -5'
22364 3' -59.3 NC_005045.1 + 24335 0.69 0.269007
Target:  5'- gGGCaaCGUCGAGGCCaagGGCCGucguGCCGg -3'
miRNA:   3'- gCUG--GUAGUUCCGGga-CCGGC----UGGCg -5'
22364 3' -59.3 NC_005045.1 + 41168 0.69 0.269007
Target:  5'- gGACCAgaaccGCCCgugGGCUGACCGg -3'
miRNA:   3'- gCUGGUaguucCGGGa--CCGGCUGGCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.