miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22364 3' -59.3 NC_005045.1 + 2194 0.68 0.319772
Target:  5'- uGACCAcuccacgCAGugccGGCuaCCUGGCCG-CCGCu -3'
miRNA:   3'- gCUGGUa------GUU----CCG--GGACCGGCuGGCG- -5'
22364 3' -59.3 NC_005045.1 + 2825 0.66 0.432046
Target:  5'- uGAUCGcaaucccCAAGGaCCC-GGCgGGCCGCu -3'
miRNA:   3'- gCUGGUa------GUUCC-GGGaCCGgCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 4278 0.69 0.282815
Target:  5'- -aGCCcgGUCAguAGGCCCcGGCCuACUGCa -3'
miRNA:   3'- gcUGG--UAGU--UCCGGGaCCGGcUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 4760 0.66 0.413312
Target:  5'- -cACCA-CAccGCCCUGGCCaagcuGACCGa -3'
miRNA:   3'- gcUGGUaGUucCGGGACCGG-----CUGGCg -5'
22364 3' -59.3 NC_005045.1 + 5219 0.76 0.096962
Target:  5'- gGAUCGUCuGGaagcuGCCCUGGCCGugUGCc -3'
miRNA:   3'- gCUGGUAGuUC-----CGGGACCGGCugGCG- -5'
22364 3' -59.3 NC_005045.1 + 5426 0.71 0.219175
Target:  5'- -aACCAUCAuGGCCUggguaugccuGCUGACCGCa -3'
miRNA:   3'- gcUGGUAGUuCCGGGac--------CGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 7249 0.76 0.099719
Target:  5'- gGACauguUCGAGGCCCgaGGCgGGCUGCg -3'
miRNA:   3'- gCUGgu--AGUUCCGGGa-CCGgCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 7284 0.66 0.441596
Target:  5'- -uGCCAggUCAugcGGGCgCCguaGGCgGGCCGCc -3'
miRNA:   3'- gcUGGU--AGU---UCCG-GGa--CCGgCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 8477 0.68 0.346907
Target:  5'- uGAgCGaCGAGGCCCUGcGCCGugagggggucaguacGCCGa -3'
miRNA:   3'- gCUgGUaGUUCCGGGAC-CGGC---------------UGGCg -5'
22364 3' -59.3 NC_005045.1 + 8777 0.67 0.366177
Target:  5'- gGAUCAagccgcgccuguacUCGGcGGCCCUGGguaUGACCGUg -3'
miRNA:   3'- gCUGGU--------------AGUU-CCGGGACCg--GCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 8894 0.67 0.389722
Target:  5'- uGAUccgCAUCAAGGacuuccacgggggguCCCUGGCCcaGGCCGa -3'
miRNA:   3'- gCUG---GUAGUUCC---------------GGGACCGG--CUGGCg -5'
22364 3' -59.3 NC_005045.1 + 9418 0.72 0.172751
Target:  5'- cCGACCGgggUCAAGGCCCUGuuGCUGcGCCuGUa -3'
miRNA:   3'- -GCUGGU---AGUUCCGGGAC--CGGC-UGG-CG- -5'
22364 3' -59.3 NC_005045.1 + 9462 0.68 0.319772
Target:  5'- aCGGCCcaaCGAGggcgucGCCCUGGCCGGuggguucccUCGCg -3'
miRNA:   3'- -GCUGGua-GUUC------CGGGACCGGCU---------GGCG- -5'
22364 3' -59.3 NC_005045.1 + 9533 0.67 0.404134
Target:  5'- cCGGCCAgggCGAcGCCCUcguugGGCCGugCa- -3'
miRNA:   3'- -GCUGGUa--GUUcCGGGA-----CCGGCugGcg -5'
22364 3' -59.3 NC_005045.1 + 12111 0.68 0.327585
Target:  5'- cCGGCCAUCuucguacGGCaCCcGGCCcuuguACCGCa -3'
miRNA:   3'- -GCUGGUAGuu-----CCG-GGaCCGGc----UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 12484 0.69 0.275842
Target:  5'- gCGGCCAagcugUUGAuGCgCCUGGCCGAgCUGCa -3'
miRNA:   3'- -GCUGGU-----AGUUcCG-GGACCGGCU-GGCG- -5'
22364 3' -59.3 NC_005045.1 + 14068 0.67 0.368744
Target:  5'- uGGCCAaCAAGGCU---GCCGAgaCCGCa -3'
miRNA:   3'- gCUGGUaGUUCCGGgacCGGCU--GGCG- -5'
22364 3' -59.3 NC_005045.1 + 16781 0.68 0.326797
Target:  5'- uGuCCAggcUCAGcaccuucGGaCCCUGGCCGACCa- -3'
miRNA:   3'- gCuGGU---AGUU-------CC-GGGACCGGCUGGcg -5'
22364 3' -59.3 NC_005045.1 + 18314 0.69 0.269007
Target:  5'- uGACUG-CGAGGUCCUGGgCGucgaugauCCGCa -3'
miRNA:   3'- gCUGGUaGUUCCGGGACCgGCu-------GGCG- -5'
22364 3' -59.3 NC_005045.1 + 18684 0.74 0.125962
Target:  5'- uGACCuggggcGGCCCUGGCCGgagcgugaugcuggcGCCGCc -3'
miRNA:   3'- gCUGGuaguu-CCGGGACCGGC---------------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.