miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22364 3' -59.3 NC_005045.1 + 8477 0.68 0.346907
Target:  5'- uGAgCGaCGAGGCCCUGcGCCGugagggggucaguacGCCGa -3'
miRNA:   3'- gCUgGUaGUUCCGGGAC-CGGC---------------UGGCg -5'
22364 3' -59.3 NC_005045.1 + 34111 0.68 0.343631
Target:  5'- -cACCGUCAAguacGGCaagGGCCGACUGUc -3'
miRNA:   3'- gcUGGUAGUU----CCGggaCCGGCUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 24800 0.68 0.34363
Target:  5'- gCGA-CAUCGgggucAGGCCCUcGGaguaGACCGCa -3'
miRNA:   3'- -GCUgGUAGU-----UCCGGGA-CCgg--CUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 39651 0.68 0.327585
Target:  5'- aCGAgCUGUCGuauGCCCUGGgCGGCaCGCu -3'
miRNA:   3'- -GCU-GGUAGUuc-CGGGACCgGCUG-GCG- -5'
22364 3' -59.3 NC_005045.1 + 12111 0.68 0.327585
Target:  5'- cCGGCCAUCuucguacGGCaCCcGGCCcuuguACCGCa -3'
miRNA:   3'- -GCUGGUAGuu-----CCG-GGaCCGGc----UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 16781 0.68 0.326797
Target:  5'- uGuCCAggcUCAGcaccuucGGaCCCUGGCCGACCa- -3'
miRNA:   3'- gCuGGU---AGUU-------CC-GGGACCGGCUGGcg -5'
22364 3' -59.3 NC_005045.1 + 9462 0.68 0.319772
Target:  5'- aCGGCCcaaCGAGggcgucGCCCUGGCCGGuggguucccUCGCg -3'
miRNA:   3'- -GCUGGua-GUUC------CGGGACCGGCU---------GGCG- -5'
22364 3' -59.3 NC_005045.1 + 2194 0.68 0.319772
Target:  5'- uGACCAcuccacgCAGugccGGCuaCCUGGCCG-CCGCu -3'
miRNA:   3'- gCUGGUa------GUU----CCG--GGACCGGCuGGCG- -5'
22364 3' -59.3 NC_005045.1 + 40106 0.68 0.319772
Target:  5'- aCGACCGgaUCGAuGCCCUugagGGCCuuguCCGCg -3'
miRNA:   3'- -GCUGGU--AGUUcCGGGA----CCGGcu--GGCG- -5'
22364 3' -59.3 NC_005045.1 + 35858 0.68 0.311341
Target:  5'- uCGAUgUAUCGAGgcaggaacgggauGCCCUGGCUGaACUGCg -3'
miRNA:   3'- -GCUG-GUAGUUC-------------CGGGACCGGC-UGGCG- -5'
22364 3' -59.3 NC_005045.1 + 4278 0.69 0.282815
Target:  5'- -aGCCcgGUCAguAGGCCCcGGCCuACUGCa -3'
miRNA:   3'- gcUGG--UAGU--UCCGGGaCCGGcUGGCG- -5'
22364 3' -59.3 NC_005045.1 + 33529 0.69 0.282815
Target:  5'- uGGCUgagCAGGGCgUUGGCCuGACgGCa -3'
miRNA:   3'- gCUGGua-GUUCCGgGACCGG-CUGgCG- -5'
22364 3' -59.3 NC_005045.1 + 30065 0.69 0.275842
Target:  5'- gCGAuCCGUCAGGcuugaGCCgUUGGCCGcCUGCa -3'
miRNA:   3'- -GCU-GGUAGUUC-----CGG-GACCGGCuGGCG- -5'
22364 3' -59.3 NC_005045.1 + 12484 0.69 0.275842
Target:  5'- gCGGCCAagcugUUGAuGCgCCUGGCCGAgCUGCa -3'
miRNA:   3'- -GCUGGU-----AGUUcCG-GGACCGGCU-GGCG- -5'
22364 3' -59.3 NC_005045.1 + 24335 0.69 0.269007
Target:  5'- gGGCaaCGUCGAGGCCaagGGCCGucguGCCGg -3'
miRNA:   3'- gCUG--GUAGUUCCGGga-CCGGC----UGGCg -5'
22364 3' -59.3 NC_005045.1 + 18314 0.69 0.269007
Target:  5'- uGACUG-CGAGGUCCUGGgCGucgaugauCCGCa -3'
miRNA:   3'- gCUGGUaGUUCCGGGACCgGCu-------GGCG- -5'
22364 3' -59.3 NC_005045.1 + 41168 0.69 0.269007
Target:  5'- gGACCAgaaccGCCCgugGGCUGACCGg -3'
miRNA:   3'- gCUGGUaguucCGGGa--CCGGCUGGCg -5'
22364 3' -59.3 NC_005045.1 + 30238 0.7 0.26231
Target:  5'- aGGCCGagCAGGGCgCCgUGGCCuGGgCGCu -3'
miRNA:   3'- gCUGGUa-GUUCCG-GG-ACCGG-CUgGCG- -5'
22364 3' -59.3 NC_005045.1 + 41061 0.7 0.255749
Target:  5'- aCGGCCcgUgcgGAGGCCCUGGagGugCGUu -3'
miRNA:   3'- -GCUGGuaG---UUCCGGGACCggCugGCG- -5'
22364 3' -59.3 NC_005045.1 + 26183 0.7 0.24303
Target:  5'- uGACCuguUCAucgccaaccugAGuguaaaGCCCgaGGCCGACCGCa -3'
miRNA:   3'- gCUGGu--AGU-----------UC------CGGGa-CCGGCUGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.