Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22365 | 3' | -55.2 | NC_005045.1 | + | 38926 | 0.66 | 0.639467 |
Target: 5'- -gGugGCCGAggUACgGUCaCccauGCGGGCCu -3' miRNA: 3'- gaCugCGGCU--AUGgUAGcG----UGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 34576 | 0.66 | 0.672929 |
Target: 5'- -aGACgcccuGCCGGUggGCCAUCGU---GGCCa -3' miRNA: 3'- gaCUG-----CGGCUA--UGGUAGCGuguCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 22411 | 0.66 | 0.6618 |
Target: 5'- -cGugGCCGcgACCGUaGUGCucGCCa -3' miRNA: 3'- gaCugCGGCuaUGGUAgCGUGucCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 21188 | 0.66 | 0.639467 |
Target: 5'- -aGACGUac-UGCCAcugugcggucaCGCACGGGCCg -3' miRNA: 3'- gaCUGCGgcuAUGGUa----------GCGUGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 4127 | 0.66 | 0.632758 |
Target: 5'- -aGGCGCC--UGCCAgcaggccgaggcagCaGUACAGGCCg -3' miRNA: 3'- gaCUGCGGcuAUGGUa-------------G-CGUGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 26174 | 0.66 | 0.67737 |
Target: 5'- -gGugGCCGAUGaccuguUCAUCGCcaaccugaguguaaaGCccgAGGCCg -3' miRNA: 3'- gaCugCGGCUAU------GGUAGCG---------------UG---UCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 30491 | 0.66 | 0.6618 |
Target: 5'- uCUGAgcauguacCGCCGGgcgACCAUCG-ACgAGGCg -3' miRNA: 3'- -GACU--------GCGGCUa--UGGUAGCgUG-UCCGg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 23232 | 0.66 | 0.650643 |
Target: 5'- gUGAUGCCGAacCCGgugauccaGCAgCAGGCUc -3' miRNA: 3'- gACUGCGGCUauGGUag------CGU-GUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 21460 | 0.66 | 0.639467 |
Target: 5'- uUGAccucacCGCCGAgaaCGUgGCGCAGGUUg -3' miRNA: 3'- gACU------GCGGCUaugGUAgCGUGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 33857 | 0.66 | 0.650643 |
Target: 5'- gCUGGCccGCCGA-GCCAUCaGCG-AGGCa -3' miRNA: 3'- -GACUG--CGGCUaUGGUAG-CGUgUCCGg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 22020 | 0.66 | 0.639467 |
Target: 5'- -cGACGCCGcUACggugGUCGCAU-GGUCg -3' miRNA: 3'- gaCUGCGGCuAUGg---UAGCGUGuCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 29947 | 0.66 | 0.650643 |
Target: 5'- aUGAUGCCcugcAUGCguugggCAUUGCcCAGGCCg -3' miRNA: 3'- gACUGCGGc---UAUG------GUAGCGuGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 15155 | 0.67 | 0.5948 |
Target: 5'- gUGACGCCGAcgGCCc-CGCcuACGuGGCUg -3' miRNA: 3'- gACUGCGGCUa-UGGuaGCG--UGU-CCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 4078 | 0.67 | 0.5948 |
Target: 5'- -aGGCGCCuGcUACugCAUCGCAguGGCg -3' miRNA: 3'- gaCUGCGG-CuAUG--GUAGCGUguCCGg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 32070 | 0.67 | 0.615989 |
Target: 5'- cCUGGCaGuuGAUGCgGUUacuuucgGCGCuGGCCg -3' miRNA: 3'- -GACUG-CggCUAUGgUAG-------CGUGuCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 30970 | 0.67 | 0.617107 |
Target: 5'- -gGGCGCCGAguacggUGCCAaCGUcaAGGUCa -3' miRNA: 3'- gaCUGCGGCU------AUGGUaGCGugUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 6944 | 0.67 | 0.617107 |
Target: 5'- -cGGCGCUGA-ACUg--GUACGGGCCg -3' miRNA: 3'- gaCUGCGGCUaUGGuagCGUGUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 6184 | 0.67 | 0.572623 |
Target: 5'- gCUGAgGCCGAgGCUcgUGaGCGGGCg -3' miRNA: 3'- -GACUgCGGCUaUGGuaGCgUGUCCGg -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 29754 | 0.67 | 0.561606 |
Target: 5'- -gGugGCCaacGGUGCCAucacagaccUCGCugAGGUUg -3' miRNA: 3'- gaCugCGG---CUAUGGU---------AGCGugUCCGG- -5' |
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22365 | 3' | -55.2 | NC_005045.1 | + | 13287 | 0.67 | 0.561606 |
Target: 5'- aCUGGCGCCaguUGCCAuccggccccaucUCGCugAaGGCg -3' miRNA: 3'- -GACUGCGGcu-AUGGU------------AGCGugU-CCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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