miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22365 3' -55.2 NC_005045.1 + 40308 0.67 0.5948
Target:  5'- aUGAUGCuCGAUACCGccacCGagGCGGGCa -3'
miRNA:   3'- gACUGCG-GCUAUGGUa---GCg-UGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 15155 0.67 0.5948
Target:  5'- gUGACGCCGAcgGCCc-CGCcuACGuGGCUg -3'
miRNA:   3'- gACUGCGGCUa-UGGuaGCG--UGU-CCGG- -5'
22365 3' -55.2 NC_005045.1 + 4455 0.67 0.5948
Target:  5'- gCUGcuACGCCGAUcACCAgugugcCGCGCuuagccucGGGCUg -3'
miRNA:   3'- -GAC--UGCGGCUA-UGGUa-----GCGUG--------UCCGG- -5'
22365 3' -55.2 NC_005045.1 + 4078 0.67 0.5948
Target:  5'- -aGGCGCCuGcUACugCAUCGCAguGGCg -3'
miRNA:   3'- gaCUGCGG-CuAUG--GUAGCGUguCCGg -5'
22365 3' -55.2 NC_005045.1 + 2872 0.67 0.58369
Target:  5'- aUGGCGCUGugcgACCAUggcuucCGCAUGGGUg -3'
miRNA:   3'- gACUGCGGCua--UGGUA------GCGUGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 32236 0.67 0.58369
Target:  5'- gCUGGCGUgGGUGCUc-UGCugGGGUCu -3'
miRNA:   3'- -GACUGCGgCUAUGGuaGCGugUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 34029 0.67 0.572623
Target:  5'- -aGGCGCUGGaggagGCCAaCGUguccCAGGCCa -3'
miRNA:   3'- gaCUGCGGCUa----UGGUaGCGu---GUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 6184 0.67 0.572623
Target:  5'- gCUGAgGCCGAgGCUcgUGaGCGGGCg -3'
miRNA:   3'- -GACUgCGGCUaUGGuaGCgUGUCCGg -5'
22365 3' -55.2 NC_005045.1 + 18587 0.67 0.572623
Target:  5'- -aGGCGCaGGUagucGCCGUCG-GCAGGUCg -3'
miRNA:   3'- gaCUGCGgCUA----UGGUAGCgUGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 10464 0.67 0.572623
Target:  5'- aUGAgGCUGcggACCAUgGCGCGGcGCUc -3'
miRNA:   3'- gACUgCGGCua-UGGUAgCGUGUC-CGG- -5'
22365 3' -55.2 NC_005045.1 + 13287 0.67 0.561606
Target:  5'- aCUGGCGCCaguUGCCAuccggccccaucUCGCugAaGGCg -3'
miRNA:   3'- -GACUGCGGcu-AUGGU------------AGCGugU-CCGg -5'
22365 3' -55.2 NC_005045.1 + 29754 0.67 0.561606
Target:  5'- -gGugGCCaacGGUGCCAucacagaccUCGCugAGGUUg -3'
miRNA:   3'- gaCugCGG---CUAUGGU---------AGCGugUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 33200 0.68 0.539755
Target:  5'- -gGACGCCaugccgGGUuacACCAagGCuCAGGCCa -3'
miRNA:   3'- gaCUGCGG------CUA---UGGUagCGuGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 21573 0.68 0.539755
Target:  5'- -cGAgUGCCGGUGCaGUgGCAUcGGCCa -3'
miRNA:   3'- gaCU-GCGGCUAUGgUAgCGUGuCCGG- -5'
22365 3' -55.2 NC_005045.1 + 34019 0.68 0.527859
Target:  5'- -gGAUGCCGGUagcccugucccgcGCCcgCuGCACAauGGCCu -3'
miRNA:   3'- gaCUGCGGCUA-------------UGGuaG-CGUGU--CCGG- -5'
22365 3' -55.2 NC_005045.1 + 27418 0.68 0.518199
Target:  5'- -gGACGgCGAcgggGCCAUCuCauGCAGGCCc -3'
miRNA:   3'- gaCUGCgGCUa---UGGUAGcG--UGUCCGG- -5'
22365 3' -55.2 NC_005045.1 + 7957 0.68 0.518199
Target:  5'- aUGAuCGCCGccaGCCuGUCGCGCAG-CCu -3'
miRNA:   3'- gACU-GCGGCua-UGG-UAGCGUGUCcGG- -5'
22365 3' -55.2 NC_005045.1 + 6991 0.69 0.501205
Target:  5'- --aGCGCCGAUACCcugccugcugugccgGUCgucaacGCACAgGGCCu -3'
miRNA:   3'- gacUGCGGCUAUGG---------------UAG------CGUGU-CCGG- -5'
22365 3' -55.2 NC_005045.1 + 25187 0.69 0.496994
Target:  5'- -aGGCGCCGAUACCcuucaguucgAUgGCACcagcgguauccGGGCg -3'
miRNA:   3'- gaCUGCGGCUAUGG----------UAgCGUG-----------UCCGg -5'
22365 3' -55.2 NC_005045.1 + 32472 0.69 0.496994
Target:  5'- -gGACaGCaCGGUGCCcUCGUccaGCAGGUCu -3'
miRNA:   3'- gaCUG-CG-GCUAUGGuAGCG---UGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.