miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22365 5' -64.2 NC_005045.1 + 10623 0.66 0.262287
Target:  5'- aCGGGCGUaucgucGGGuACGugauGGGCaagACUGGCAa -3'
miRNA:   3'- cGCCCGCG------CCC-UGU----CCCGa--UGGCCGU- -5'
22365 5' -64.2 NC_005045.1 + 21836 0.66 0.249023
Target:  5'- cGCGccagcuuGGCaGCGaGGuuguucacuaGCAGGGC-GCCGGCAg -3'
miRNA:   3'- -CGC-------CCG-CGC-CC----------UGUCCCGaUGGCCGU- -5'
22365 5' -64.2 NC_005045.1 + 22267 0.66 0.237505
Target:  5'- gGCGuGCGUGuGGGCaaggAGGGCcGCUGGCc -3'
miRNA:   3'- -CGCcCGCGC-CCUG----UCCCGaUGGCCGu -5'
22365 5' -64.2 NC_005045.1 + 36976 0.66 0.225866
Target:  5'- -aGGGacacguuaGCGGGGacCGGGGUacgguugccggUGCCGGCGa -3'
miRNA:   3'- cgCCCg-------CGCCCU--GUCCCG-----------AUGGCCGU- -5'
22365 5' -64.2 NC_005045.1 + 33989 0.67 0.198874
Target:  5'- aUGGGCGCGauggguguagcGGACAcGGCauucauCCGGCAg -3'
miRNA:   3'- cGCCCGCGC-----------CCUGUcCCGau----GGCCGU- -5'
22365 5' -64.2 NC_005045.1 + 6203 0.68 0.1884
Target:  5'- aGCGGGCGaaGG-CGGcGGCUAaggacacCUGGCAg -3'
miRNA:   3'- -CGCCCGCgcCCuGUC-CCGAU-------GGCCGU- -5'
22365 5' -64.2 NC_005045.1 + 42225 0.68 0.179812
Target:  5'- aUGGGCaGCGaGGGCAGGGaagcccucgccacCCGGCGa -3'
miRNA:   3'- cGCCCG-CGC-CCUGUCCCgau----------GGCCGU- -5'
22365 5' -64.2 NC_005045.1 + 162 0.68 0.179812
Target:  5'- aUGGGCaGCGaGGGCAGGGaagcccucgccacCCGGCGa -3'
miRNA:   3'- cGCCCG-CGC-CCUGUCCCgau----------GGCCGU- -5'
22365 5' -64.2 NC_005045.1 + 15392 0.68 0.177951
Target:  5'- gGCGGGCcgugGCGGacguguacgagcgaGGCGGGGC-GCCGGa- -3'
miRNA:   3'- -CGCCCG----CGCC--------------CUGUCCCGaUGGCCgu -5'
22365 5' -64.2 NC_005045.1 + 8573 0.68 0.165833
Target:  5'- aCGGaaucaaguuGC-CGGGGCuGGuGCUGCCGGCGu -3'
miRNA:   3'- cGCC---------CGcGCCCUGuCC-CGAUGGCCGU- -5'
22365 5' -64.2 NC_005045.1 + 2935 0.69 0.141525
Target:  5'- gGCGGGUucGUGGuAguGGGC-GCCGGCGu -3'
miRNA:   3'- -CGCCCG--CGCCcUguCCCGaUGGCCGU- -5'
22365 5' -64.2 NC_005045.1 + 34366 0.7 0.127177
Target:  5'- -gGGGCaacuGCGGGGCgucuucGGGGaCUucACCGGCAa -3'
miRNA:   3'- cgCCCG----CGCCCUG------UCCC-GA--UGGCCGU- -5'
22365 5' -64.2 NC_005045.1 + 41289 0.71 0.105268
Target:  5'- aGCGGGCGcCGGGGC--GGUUGCacaGGCu -3'
miRNA:   3'- -CGCCCGC-GCCCUGucCCGAUGg--CCGu -5'
22365 5' -64.2 NC_005045.1 + 22913 0.72 0.086943
Target:  5'- aGCGGcGgaGCGGGACAGGGCggGaaGGCc -3'
miRNA:   3'- -CGCC-Cg-CGCCCUGUCCCGa-UggCCGu -5'
22365 5' -64.2 NC_005045.1 + 6471 0.72 0.082292
Target:  5'- aGCGGGCGaccuGGGACAaGGUggcggcgugUGCCGGUAg -3'
miRNA:   3'- -CGCCCGCg---CCCUGUcCCG---------AUGGCCGU- -5'
22365 5' -64.2 NC_005045.1 + 33948 1.09 0.0001
Target:  5'- aGCGGGCGCGGGACAGGGCUACCGGCAu -3'
miRNA:   3'- -CGCCCGCGCCCUGUCCCGAUGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.