Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22365 | 5' | -64.2 | NC_005045.1 | + | 10623 | 0.66 | 0.262287 |
Target: 5'- aCGGGCGUaucgucGGGuACGugauGGGCaagACUGGCAa -3' miRNA: 3'- cGCCCGCG------CCC-UGU----CCCGa--UGGCCGU- -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 21836 | 0.66 | 0.249023 |
Target: 5'- cGCGccagcuuGGCaGCGaGGuuguucacuaGCAGGGC-GCCGGCAg -3' miRNA: 3'- -CGC-------CCG-CGC-CC----------UGUCCCGaUGGCCGU- -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 22267 | 0.66 | 0.237505 |
Target: 5'- gGCGuGCGUGuGGGCaaggAGGGCcGCUGGCc -3' miRNA: 3'- -CGCcCGCGC-CCUG----UCCCGaUGGCCGu -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 36976 | 0.66 | 0.225866 |
Target: 5'- -aGGGacacguuaGCGGGGacCGGGGUacgguugccggUGCCGGCGa -3' miRNA: 3'- cgCCCg-------CGCCCU--GUCCCG-----------AUGGCCGU- -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 33989 | 0.67 | 0.198874 |
Target: 5'- aUGGGCGCGauggguguagcGGACAcGGCauucauCCGGCAg -3' miRNA: 3'- cGCCCGCGC-----------CCUGUcCCGau----GGCCGU- -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 6203 | 0.68 | 0.1884 |
Target: 5'- aGCGGGCGaaGG-CGGcGGCUAaggacacCUGGCAg -3' miRNA: 3'- -CGCCCGCgcCCuGUC-CCGAU-------GGCCGU- -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 42225 | 0.68 | 0.179812 |
Target: 5'- aUGGGCaGCGaGGGCAGGGaagcccucgccacCCGGCGa -3' miRNA: 3'- cGCCCG-CGC-CCUGUCCCgau----------GGCCGU- -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 162 | 0.68 | 0.179812 |
Target: 5'- aUGGGCaGCGaGGGCAGGGaagcccucgccacCCGGCGa -3' miRNA: 3'- cGCCCG-CGC-CCUGUCCCgau----------GGCCGU- -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 15392 | 0.68 | 0.177951 |
Target: 5'- gGCGGGCcgugGCGGacguguacgagcgaGGCGGGGC-GCCGGa- -3' miRNA: 3'- -CGCCCG----CGCC--------------CUGUCCCGaUGGCCgu -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 8573 | 0.68 | 0.165833 |
Target: 5'- aCGGaaucaaguuGC-CGGGGCuGGuGCUGCCGGCGu -3' miRNA: 3'- cGCC---------CGcGCCCUGuCC-CGAUGGCCGU- -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 2935 | 0.69 | 0.141525 |
Target: 5'- gGCGGGUucGUGGuAguGGGC-GCCGGCGu -3' miRNA: 3'- -CGCCCG--CGCCcUguCCCGaUGGCCGU- -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 34366 | 0.7 | 0.127177 |
Target: 5'- -gGGGCaacuGCGGGGCgucuucGGGGaCUucACCGGCAa -3' miRNA: 3'- cgCCCG----CGCCCUG------UCCC-GA--UGGCCGU- -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 41289 | 0.71 | 0.105268 |
Target: 5'- aGCGGGCGcCGGGGC--GGUUGCacaGGCu -3' miRNA: 3'- -CGCCCGC-GCCCUGucCCGAUGg--CCGu -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 22913 | 0.72 | 0.086943 |
Target: 5'- aGCGGcGgaGCGGGACAGGGCggGaaGGCc -3' miRNA: 3'- -CGCC-Cg-CGCCCUGUCCCGa-UggCCGu -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 6471 | 0.72 | 0.082292 |
Target: 5'- aGCGGGCGaccuGGGACAaGGUggcggcgugUGCCGGUAg -3' miRNA: 3'- -CGCCCGCg---CCCUGUcCCG---------AUGGCCGU- -5' |
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22365 | 5' | -64.2 | NC_005045.1 | + | 33948 | 1.09 | 0.0001 |
Target: 5'- aGCGGGCGCGGGACAGGGCUACCGGCAu -3' miRNA: 3'- -CGCCCGCGCCCUGUCCCGAUGGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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