miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22366 5' -58.3 NC_005045.1 + 34393 1.05 0.000549
Target:  5'- cUUCACCGGCAACGUGCCGCGUGAGCAc -3'
miRNA:   3'- -AAGUGGCCGUUGCACGGCGCACUCGU- -5'
22366 5' -58.3 NC_005045.1 + 32436 0.72 0.168961
Target:  5'- gUCACCGGCcuUGaaGCCGCGUGcGGCGg -3'
miRNA:   3'- aAGUGGCCGuuGCa-CGGCGCAC-UCGU- -5'
22366 5' -58.3 NC_005045.1 + 35499 0.72 0.188552
Target:  5'- aUCGCCGGUGGCG-GCUGCG-GGGUc -3'
miRNA:   3'- aAGUGGCCGUUGCaCGGCGCaCUCGu -5'
22366 5' -58.3 NC_005045.1 + 6259 0.71 0.204533
Target:  5'- aUCGCCGGCGGCGU----CGUGGGCAg -3'
miRNA:   3'- aAGUGGCCGUUGCAcggcGCACUCGU- -5'
22366 5' -58.3 NC_005045.1 + 26591 0.7 0.246415
Target:  5'- --aGCCGGCuAugGuUGCCGCGUuGGCGu -3'
miRNA:   3'- aagUGGCCG-UugC-ACGGCGCAcUCGU- -5'
22366 5' -58.3 NC_005045.1 + 39634 0.69 0.287762
Target:  5'- --uGCCGGCGACG-GCgGCGacGAGCu -3'
miRNA:   3'- aagUGGCCGUUGCaCGgCGCa-CUCGu -5'
22366 5' -58.3 NC_005045.1 + 29005 0.68 0.327043
Target:  5'- aUCGCUGGCAaaugguucgagcacaACGUGCagcaggaaguucugCGCGgUGAGCGu -3'
miRNA:   3'- aAGUGGCCGU---------------UGCACG--------------GCGC-ACUCGU- -5'
22366 5' -58.3 NC_005045.1 + 7269 0.68 0.34266
Target:  5'- -gCGCCGuaGGCGgGCCGCcguuguucuguGUGAGCAg -3'
miRNA:   3'- aaGUGGCcgUUGCaCGGCG-----------CACUCGU- -5'
22366 5' -58.3 NC_005045.1 + 28116 0.68 0.351093
Target:  5'- gUUCAgCCGGCAACucaaUGCCGgG-GAGCc -3'
miRNA:   3'- -AAGU-GGCCGUUGc---ACGGCgCaCUCGu -5'
22366 5' -58.3 NC_005045.1 + 39732 0.68 0.351093
Target:  5'- -gUACgGGCcaAGCGUGCCGCccaGGGCAu -3'
miRNA:   3'- aaGUGgCCG--UUGCACGGCGca-CUCGU- -5'
22366 5' -58.3 NC_005045.1 + 30629 0.67 0.39543
Target:  5'- cUUCG-CGGCc-CGUGUCGCugGUGAGCAg -3'
miRNA:   3'- -AAGUgGCCGuuGCACGGCG--CACUCGU- -5'
22366 5' -58.3 NC_005045.1 + 6311 0.66 0.42371
Target:  5'- -cCGCCGGCGAUGgugGCUGCGaaGGUu -3'
miRNA:   3'- aaGUGGCCGUUGCa--CGGCGCacUCGu -5'
22366 5' -58.3 NC_005045.1 + 30205 0.66 0.437316
Target:  5'- -cCGCCGGCAACGUGaugcuaucagguaucCCGgaGgccGAGCAg -3'
miRNA:   3'- aaGUGGCCGUUGCAC---------------GGCg-Ca--CUCGU- -5'
22366 5' -58.3 NC_005045.1 + 27712 0.66 0.453167
Target:  5'- -cUACUGGCGGCGUaucgaggcgaccGUCGCugGUGAGCu -3'
miRNA:   3'- aaGUGGCCGUUGCA------------CGGCG--CACUCGu -5'
22366 5' -58.3 NC_005045.1 + 10654 0.66 0.463232
Target:  5'- --gACUGGCAagaACGUggGCCGCGUcguGGGCu -3'
miRNA:   3'- aagUGGCCGU---UGCA--CGGCGCA---CUCGu -5'
22366 5' -58.3 NC_005045.1 + 32994 0.66 0.463232
Target:  5'- --gACCGGCGGCGcggucuUGCUucaggGCGuUGAGCAc -3'
miRNA:   3'- aagUGGCCGUUGC------ACGG-----CGC-ACUCGU- -5'
22366 5' -58.3 NC_005045.1 + 5459 0.66 0.463232
Target:  5'- --aGCgCGGCGcucuUGUGCCuCGUGGGCAu -3'
miRNA:   3'- aagUG-GCCGUu---GCACGGcGCACUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.